Best TWAS P=2.19e-41 · Best GWAS P=2.9e-144 conditioned to 9.31e-75
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FTO | 0.11 | 0.00 | bslmm | 739 | 0.02 | 1.6e-03 | 2.3 | -10.6 | 2.5e-26 | 0.38 | 0.09 | 0.55 | TRUE |
2 | CommonMind | Brain Pre-frontal Cortex | RBL2 | 0.22 | 0.24 | enet | 15 | 0.26 | 1.8e-31 | -5.1 | 6.3 | 3.0e-10 | 0.02 | 1.00 | 0.00 | FALSE |
3 | GTEx | Adipose Subcutaneous | RBL2 | 0.34 | 0.28 | enet | 18 | 0.30 | 1.0e-24 | -5.1 | 6.2 | 6.2e-10 | 0.02 | 1.00 | 0.00 | FALSE |
4 | GTEx | Artery Aorta | RBL2 | 0.27 | 0.21 | enet | 14 | 0.19 | 1.5e-10 | -5.1 | 5.2 | 1.9e-07 | 0.04 | 1.00 | 0.00 | FALSE |
5 | GTEx | Artery Tibial | RBL2 | 0.16 | 0.17 | enet | 11 | 0.20 | 2.1e-15 | -5.2 | 6.2 | 5.0e-10 | 0.02 | 1.00 | 0.00 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | RBL2 | 0.55 | 0.55 | enet | 20 | 0.46 | 2.1e-13 | -5.1 | 5.4 | 8.1e-08 | 0.04 | 1.00 | 0.00 | FALSE |
7 | GTEx | Brain Cerebellum | RBL2 | 0.66 | 0.72 | enet | 16 | 0.70 | 5.7e-28 | -5.1 | 5.3 | 1.1e-07 | 0.05 | 1.00 | 0.00 | FALSE |
8 | GTEx | Brain Cortex | RBL2 | 0.51 | 0.45 | enet | 12 | 0.46 | 3.5e-14 | -5.0 | 6.7 | 2.9e-11 | 0.02 | 1.00 | 0.00 | FALSE |
9 | GTEx | Breast Mammary Tissue | RBL2 | 0.36 | 0.35 | lasso | 3 | 0.36 | 3.0e-19 | -5.2 | 5.3 | 1.4e-07 | 0.04 | 1.00 | 0.00 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | RBL2 | 0.40 | 0.29 | lasso | 2 | 0.25 | 1.4e-06 | -5.2 | 5.2 | 1.9e-07 | 0.04 | 0.60 | 0.02 | FALSE |
11 | GTEx | Breast Mammary Tissue (Female) | RBL2 | 0.47 | 0.27 | lasso | 7 | 0.20 | 1.1e-06 | -5.0 | 5.2 | 2.5e-07 | 0.04 | 0.97 | 0.00 | FALSE |
12 | GTEx | Colon Sigmoid | RBL2 | 0.38 | 0.37 | lasso | 12 | 0.29 | 8.4e-11 | -5.1 | 5.8 | 7.8e-09 | 0.03 | 1.00 | 0.00 | FALSE |
13 | GTEx | Esophagus Mucosa | RBL2 | 0.36 | 0.36 | enet | 37 | 0.37 | 2.9e-26 | -5.1 | 6.1 | 1.0e-09 | 0.00 | 1.00 | 0.00 | FALSE |
14 | GTEx | Esophagus Muscularis | RBL2 | 0.36 | 0.38 | enet | 10 | 0.41 | 6.8e-27 | -5.1 | 5.2 | 2.5e-07 | 0.05 | 1.00 | 0.00 | FALSE |
15 | GTEx | Lung | RBL2 | 0.29 | 0.37 | enet | 16 | 0.35 | 9.1e-28 | -5.1 | 5.6 | 2.2e-08 | 0.03 | 1.00 | 0.00 | FALSE |
16 | GTEx | Muscle Skeletal | RBL2 | 0.11 | 0.00 | lasso | 5 | 0.00 | 2.9e-01 | -6.8 | 9.6 | 8.4e-22 | -0.10 | 0.28 | 0.23 | FALSE |
17 | GTEx | Nerve Tibial | RBL2 | 0.46 | 0.52 | enet | 19 | 0.53 | 1.6e-43 | -5.1 | 5.5 | 3.2e-08 | 0.04 | 1.00 | 0.00 | FALSE |
18 | GTEx | Pancreas | RBL2 | 0.36 | 0.36 | enet | 26 | 0.36 | 5.9e-16 | -5.1 | 5.2 | 2.1e-07 | 0.08 | 1.00 | 0.00 | FALSE |
19 | GTEx | Pituitary | RBL2 | 0.36 | 0.39 | lasso | 6 | 0.40 | 4.5e-11 | -5.1 | -5.1 | 2.7e-07 | -0.04 | 0.98 | 0.00 | FALSE |
20 | GTEx | Prostate | RBL2 | 0.55 | 0.45 | lasso | 4 | 0.45 | 1.0e-12 | -5.1 | 5.2 | 2.5e-07 | 0.04 | 0.99 | 0.00 | FALSE |
21 | GTEx | Skin Not Sun Exposed Suprapubic | RBL2 | 0.35 | 0.33 | enet | 16 | 0.34 | 2.6e-19 | -5.1 | 5.7 | 1.0e-08 | 0.03 | 1.00 | 0.00 | FALSE |
22 | GTEx | Skin Sun Exposed Lower leg | RBL2 | 0.35 | 0.39 | enet | 25 | 0.37 | 2.9e-32 | -5.1 | 5.4 | 6.1e-08 | 0.03 | 1.00 | 0.00 | FALSE |
23 | GTEx | Spleen | RBL2 | 0.59 | 0.47 | enet | 51 | 0.46 | 3.2e-13 | -5.1 | 6.0 | 2.2e-09 | -0.06 | 1.00 | 0.00 | FALSE |
24 | GTEx | Stomach | RBL2 | 0.33 | 0.26 | enet | 20 | 0.26 | 8.7e-13 | -5.1 | 5.1 | 2.8e-07 | 0.04 | 1.00 | 0.00 | FALSE |
25 | GTEx | Testis | AKTIP | 0.19 | 0.00 | enet | 26 | 0.00 | 1.9e-01 | -5.0 | -13.5 | 2.2e-41 | 0.51 | 0.03 | 0.40 | TRUE |
26 | GTEx | Thyroid | RBL2 | 0.34 | 0.47 | lasso | 4 | 0.45 | 3.6e-38 | -5.1 | 5.2 | 1.5e-07 | 0.04 | 1.00 | 0.00 | FALSE |
27 | GTEx | Vagina | RBL2 | 0.41 | 0.37 | enet | 13 | 0.34 | 1.6e-08 | -4.9 | 5.5 | 4.6e-08 | 0.03 | 0.89 | 0.01 | FALSE |
28 | YFS | Blood | AKTIP | 0.19 | 0.27 | lasso | 13 | 0.30 | 3.3e-99 | -7.1 | -6.6 | 3.7e-11 | -0.01 | 1.00 | 0.00 | FALSE |
29 | The Cancer Genome Atlas | Esophageal Carcinoma | RBL2 | 0.08 | 0.04 | lasso | 3 | 0.03 | 4.4e-02 | -7.1 | -5.2 | 1.7e-07 | 0.00 | 0.01 | 0.81 | FALSE |
30 | The Cancer Genome Atlas | Glioblastoma Multiforme | FTO | 0.27 | 0.16 | enet | 13 | 0.14 | 6.7e-05 | 1.8 | -8.5 | 2.6e-17 | 0.33 | 0.11 | 0.32 | TRUE |
31 | The Cancer Genome Atlas | Brain Lower Grade Glioma | RBL2 | 0.03 | 0.06 | enet | 5 | 0.05 | 8.2e-07 | -5.0 | 6.0 | 2.2e-09 | 0.04 | 0.61 | 0.39 | FALSE |
32 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RBL2 | 0.11 | 0.08 | blup | 44 | 0.06 | 1.5e-03 | -6.7 | 6.8 | 9.9e-12 | -0.03 | 0.01 | 0.80 | FALSE |