Best TWAS P=7.98e-14 · Best GWAS P=1.07e-22 conditioned to 2.18e-14
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.08 | lasso | 2 | 0.07 | 6.8e-09 | -5.9 | -5.8 | 5.7e-09 | 0.08 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | EXOSC10 | 0.17 | 0.00 | lasso | 3 | 0.00 | 1.8e-01 | -5.9 | -5.3 | 1.0e-07 | 0.08 | 0.05 | 0.04 | FALSE |
3 | GTEx | Adipose Visceral Omentum | RP4-635E18.7 | 0.19 | 0.08 | lasso | 6 | 0.05 | 9.0e-04 | -5.9 | -5.7 | 1.2e-08 | 0.09 | 0.44 | 0.02 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | EXOSC10 | 0.23 | 0.10 | lasso | 3 | 0.12 | 6.4e-04 | -4.8 | -5.2 | 1.6e-07 | 0.10 | 0.19 | 0.04 | FALSE |
5 | GTEx | Brain Cerebellum | EXOSC10 | 0.33 | 0.16 | lasso | 6 | 0.18 | 3.8e-06 | -5.9 | -5.4 | 7.2e-08 | 0.10 | 0.78 | 0.01 | FALSE |
6 | GTEx | Brain Cerebellum | RP4-635E18.7 | 0.17 | 0.17 | lasso | 5 | 0.09 | 1.3e-03 | -5.9 | -5.8 | 6.0e-09 | 0.07 | 0.38 | 0.03 | FALSE |
7 | GTEx | Brain Cortex | RP4-635E18.7 | 0.17 | 0.05 | lasso | 4 | 0.07 | 6.4e-03 | -5.2 | -5.2 | 2.3e-07 | 0.08 | 0.18 | 0.04 | FALSE |
8 | GTEx | Esophagus Mucosa | KIF1B | 0.10 | 0.00 | enet | 17 | 0.01 | 1.2e-01 | -4.4 | -5.8 | 7.3e-09 | 0.08 | 0.22 | 0.04 | TRUE |
9 | GTEx | Lung | EXOSC10 | 0.11 | 0.07 | lasso | 4 | 0.05 | 1.2e-04 | -5.9 | -5.8 | 5.4e-09 | 0.06 | 0.88 | 0.01 | FALSE |
10 | GTEx | Muscle Skeletal | KIF1B | 0.04 | 0.08 | lasso | 1 | 0.07 | 3.1e-07 | -5.3 | -5.3 | 1.4e-07 | -0.01 | 0.98 | 0.00 | FALSE |
11 | GTEx | Thyroid | RP4-635E18.7 | 0.07 | 0.02 | lasso | 2 | 0.01 | 5.5e-02 | -5.9 | -7.5 | 8.0e-14 | 0.22 | 0.18 | 0.03 | TRUE |
12 | METSIM | Adipose | MTOR | 0.04 | 0.02 | bslmm | 434 | 0.02 | 1.5e-04 | -5.2 | -5.2 | 2.4e-07 | 0.01 | 0.90 | 0.01 | FALSE |
13 | NTR | Blood | SPSB1 | 0.02 | 0.00 | enet | 12 | 0.01 | 3.5e-03 | -5.3 | -5.7 | 1.6e-08 | 0.05 | 0.09 | 0.14 | TRUE |
14 | ROSMAP | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.06 | lasso | 2 | 0.06 | 4.9e-08 | -5.9 | -5.9 | 3.6e-09 | 0.07 | 1.00 | 0.00 | FALSE |
15 | ROSMAP | Brain Pre-frontal Cortex | MTOR | 0.07 | 0.05 | bslmm | 423 | 0.04 | 2.0e-06 | -5.2 | -6.1 | 8.6e-10 | 0.13 | 1.00 | 0.00 | FALSE |
16 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MTOR | 0.02 | 0.02 | blup | 54 | 0.02 | 5.4e-03 | -5.5 | -5.3 | 8.6e-08 | 0.10 | 0.06 | 0.67 | FALSE |
17 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTOR | 0.03 | 0.01 | blup | 54 | 0.02 | 5.9e-03 | -5.5 | -5.3 | 8.6e-08 | 0.08 | 0.03 | 0.74 | FALSE |