Best TWAS P=1.87e-10 · Best GWAS P=1.24e-09 conditioned to 0.722
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Heart Left Ventricle | PASK | 0.10 | 0.03 | lasso | 6 | 0.03 | 9.4e-03 | -4.0 | -5.6 | 2.6e-08 | -0.47 | 0.07 | 0.56 | FALSE |
2 | GTEx | Lung | PASK | 0.09 | 0.02 | lasso | 2 | 0.03 | 3.7e-03 | -4.1 | -5.4 | 8.3e-08 | -0.32 | 0.44 | 0.05 | FALSE |
3 | GTEx | Muscle Skeletal | PASK | 0.06 | 0.00 | enet | 13 | 0.01 | 8.6e-02 | 4.3 | -5.5 | 2.9e-08 | -0.31 | 0.06 | 0.25 | FALSE |
4 | GTEx | Nerve Tibial | PASK | 0.26 | 0.18 | enet | 12 | 0.22 | 1.0e-15 | 4.3 | -5.3 | 1.0e-07 | -0.62 | 0.98 | 0.02 | FALSE |
5 | GTEx | Skin Not Sun Exposed Suprapubic | PASK | 0.28 | 0.16 | enet | 17 | 0.19 | 1.9e-10 | 4.3 | -5.3 | 9.9e-08 | -0.43 | 0.97 | 0.02 | FALSE |
6 | GTEx | Small Intestine Terminal Ileum | MTERFD2 | 0.37 | 0.24 | lasso | 3 | 0.18 | 7.3e-05 | 5.8 | -6.0 | 1.5e-09 | -0.67 | 0.04 | 0.78 | FALSE |
7 | GTEx | Testis | MTERFD2 | 0.43 | 0.17 | enet | 32 | 0.25 | 1.4e-11 | 5.9 | 5.8 | 7.4e-09 | 0.74 | 0.02 | 0.98 | FALSE |
8 | GTEx | Whole Blood | PASK | 0.25 | 0.15 | enet | 10 | 0.21 | 4.4e-19 | 5.7 | -6.4 | 1.9e-10 | -0.93 | 0.03 | 0.97 | TRUE |
9 | NTR | Blood | PASK | 0.08 | 0.09 | bslmm | 437 | 0.09 | 1.0e-26 | 5.8 | -6.0 | 1.9e-09 | -0.71 | 0.03 | 0.97 | FALSE |
10 | ROSMAP | Brain Pre-frontal Cortex | SNED1 | 0.17 | 0.12 | lasso | 4 | 0.14 | 5.2e-18 | 4.3 | 5.6 | 2.1e-08 | 0.55 | 0.98 | 0.02 | FALSE |
11 | YFS | Blood | PASK | 0.31 | 0.46 | lasso | 11 | 0.48 | 1.8e-181 | 5.6 | -6.1 | 9.1e-10 | -0.82 | 0.10 | 0.90 | FALSE |
12 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PASK | 0.04 | 0.00 | blup | 92 | 0.01 | 3.2e-02 | 5.9 | -5.4 | 7.8e-08 | -0.78 | 0.02 | 0.61 | FALSE |