Best TWAS P=2.62e-09 · Best GWAS P=6.42e-16 conditioned to 1.78e-08
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Visceral Omentum | ATG7 | 0.18 | 0.06 | lasso | 4 | 0.06 | 2.9e-04 | -4.4 | 5.2 | 2.1e-07 | -0.02 | 0.76 | 0.02 | FALSE |
| 2 | GTEx | Cells EBV-transformed lymphocytes | PPARG | 0.23 | 0.09 | lasso | 12 | 0.07 | 2.1e-03 | 5.0 | 5.9 | 4.0e-09 | 0.75 | 0.11 | 0.76 | TRUE |
| 3 | GTEx | Cells Transformed fibroblasts | HRH1 | 0.20 | 0.00 | lasso | 3 | 0.01 | 1.1e-01 | -6.7 | 6.0 | 2.6e-09 | -0.01 | 0.03 | 0.68 | TRUE |
| 4 | GTEx | Cells Transformed fibroblasts | ATG7 | 0.26 | 0.10 | enet | 13 | 0.17 | 6.8e-13 | -4.3 | 5.3 | 9.9e-08 | -0.02 | 1.00 | 0.00 | FALSE |
| 5 | GTEx | Heart Left Ventricle | PPARG | 0.25 | 0.07 | enet | 36 | 0.10 | 5.1e-06 | 8.0 | 5.3 | 1.4e-07 | 0.67 | 0.01 | 0.98 | FALSE |
| 6 | GTEx | Nerve Tibial | ATG7 | 0.11 | 0.04 | lasso | 6 | 0.04 | 8.9e-04 | -4.4 | 5.4 | 8.4e-08 | -0.01 | 0.29 | 0.07 | FALSE |
| 7 | GTEx | Testis | VGLL4 | 0.18 | -0.01 | lasso | 3 | -0.01 | 6.9e-01 | -4.5 | -5.2 | 2.5e-07 | 0.02 | 0.06 | 0.16 | FALSE |
| 8 | METSIM | Adipose | ATG7 | 0.06 | 0.01 | bslmm | 663 | 0.01 | 2.1e-02 | -5.1 | 5.2 | 2.4e-07 | 0.09 | 0.68 | 0.04 | FALSE |