Best TWAS P=2.87e-26 · Best GWAS P=9.72e-36 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | RAB24 | 0.14 | 0.06 | enet | 14 | 0.09 | 4.2e-11 | 6.9 | 7.5 | 8.4e-14 | -0.31 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Visceral Omentum | MXD3 | 0.33 | 0.06 | lasso | 6 | 0.05 | 9.1e-04 | -5.7 | -6.1 | 8.7e-10 | 0.32 | 0.29 | 0.04 | FALSE |
3 | GTEx | Artery Tibial | RAB24 | 0.18 | 0.09 | lasso | 3 | 0.07 | 2.3e-06 | 7.0 | 5.2 | 1.8e-07 | -0.17 | 0.99 | 0.00 | FALSE |
4 | GTEx | Artery Tibial | MXD3 | 0.12 | 0.13 | enet | 5 | 0.12 | 7.0e-10 | -5.7 | -5.2 | 2.0e-07 | 0.29 | 1.00 | 0.00 | TRUE |
5 | GTEx | Brain Cerebellum | MXD3 | 0.28 | 0.31 | lasso | 2 | 0.30 | 1.6e-09 | -5.7 | -5.7 | 1.6e-08 | 0.32 | 0.90 | 0.00 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | RAB24 | 0.37 | 0.26 | lasso | 6 | 0.24 | 1.7e-08 | -6.7 | 7.1 | 9.8e-13 | -0.52 | 0.97 | 0.00 | FALSE |
7 | GTEx | Colon Sigmoid | MXD3 | 0.35 | 0.27 | lasso | 9 | 0.29 | 6.3e-11 | -5.7 | -5.9 | 3.8e-09 | 0.39 | 0.98 | 0.00 | FALSE |
8 | GTEx | Colon Transverse | PRELID1 | 0.31 | 0.28 | lasso | 4 | 0.26 | 1.1e-12 | -5.7 | 5.6 | 1.7e-08 | -0.34 | 1.00 | 0.00 | FALSE |
9 | GTEx | Esophagus Gastroesophageal Junction | MXD3 | 0.17 | 0.12 | lasso | 3 | 0.08 | 9.5e-04 | -5.7 | -6.9 | 6.0e-12 | 0.34 | 0.08 | 0.06 | TRUE |
10 | GTEx | Esophagus Muscularis | MXD3 | 0.27 | 0.20 | enet | 10 | 0.24 | 1.6e-14 | -5.7 | -5.3 | 1.1e-07 | 0.33 | 1.00 | 0.00 | FALSE |
11 | GTEx | Heart Left Ventricle | MXD3 | 0.17 | 0.03 | lasso | 3 | 0.03 | 1.5e-02 | -5.7 | -5.5 | 3.5e-08 | 0.31 | 0.15 | 0.04 | FALSE |
12 | GTEx | Pituitary | MXD3 | 0.25 | 0.20 | lasso | 6 | 0.16 | 7.5e-05 | -5.1 | -5.8 | 7.3e-09 | 0.46 | 0.37 | 0.06 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | PRELID1 | 0.06 | 0.02 | enet | 5 | 0.03 | 3.4e-03 | -5.7 | 6.0 | 1.6e-09 | -0.43 | 0.63 | 0.02 | TRUE |
14 | GTEx | Stomach | MXD3 | 0.21 | 0.03 | lasso | 7 | 0.08 | 1.4e-04 | -6.6 | -6.5 | 9.8e-11 | 0.51 | 0.52 | 0.08 | FALSE |
15 | GTEx | Testis | DBN1 | 0.10 | 0.00 | lasso | 6 | 0.00 | 4.6e-01 | -5.1 | 6.0 | 2.0e-09 | -0.45 | 0.06 | 0.04 | FALSE |
16 | METSIM | Adipose | RAB24 | 0.05 | 0.02 | lasso | 4 | 0.02 | 1.2e-03 | 6.9 | 6.8 | 1.2e-11 | -0.32 | 0.39 | 0.29 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | PRELID1 | 0.05 | 0.05 | enet | 10 | 0.05 | 1.8e-07 | -6.5 | 6.7 | 2.2e-11 | -0.52 | 1.00 | 0.00 | FALSE |
18 | YFS | Blood | PRELID1 | 0.18 | 0.14 | enet | 18 | 0.18 | 4.0e-58 | -5.5 | 6.9 | 4.1e-12 | -0.39 | 1.00 | 0.00 | FALSE |
19 | The Cancer Genome Atlas | Breast Invasive Carcinoma | MXD3 | 0.02 | 0.02 | enet | 4 | 0.02 | 1.8e-04 | -6.6 | -6.6 | 3.4e-11 | 0.52 | 0.21 | 0.75 | FALSE |
20 | The Cancer Genome Atlas | Colon Adenocarcinoma | PRELID1 | 0.09 | 0.01 | blup | 38 | 0.05 | 1.1e-03 | -5.5 | 5.2 | 1.5e-07 | -0.16 | 0.05 | 0.37 | FALSE |
21 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | FGFR4 | 0.08 | 0.06 | blup | 46 | 0.07 | 2.5e-08 | -12.5 | 6.9 | 4.0e-12 | -0.75 | 0.00 | 1.00 | TRUE |
22 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | MXD3 | 0.05 | 0.00 | lasso | 6 | 0.00 | 6.9e-01 | -7.3 | -6.8 | 7.8e-12 | 0.22 | 0.02 | 0.10 | FALSE |
23 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | PRELID1 | 0.24 | 0.11 | lasso | 5 | 0.10 | 1.2e-11 | -5.5 | 5.6 | 2.1e-08 | -0.32 | 1.00 | 0.00 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | PRELID1 | 0.33 | 0.08 | enet | 4 | 0.08 | 2.7e-05 | -5.7 | 5.7 | 1.0e-08 | -0.33 | 0.50 | 0.05 | FALSE |
25 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MXD3 | 0.04 | 0.02 | lasso | 3 | 0.02 | 2.9e-03 | -6.3 | -6.9 | 6.3e-12 | 0.53 | 0.02 | 0.59 | FALSE |
26 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | PRELID1 | 0.08 | 0.10 | lasso | 4 | 0.07 | 2.9e-04 | -5.5 | 5.7 | 1.0e-08 | -0.27 | 0.12 | 0.47 | FALSE |
27 | The Cancer Genome Atlas | Lung Adenocarcinoma | MXD3 | 0.04 | 0.02 | blup | 41 | 0.02 | 5.6e-04 | -6.3 | -7.5 | 5.1e-14 | 0.52 | 0.02 | 0.91 | FALSE |
28 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FGFR4 | 0.11 | 0.04 | enet | 19 | 0.06 | 8.7e-07 | -12.5 | 10.6 | 2.9e-26 | -0.87 | 0.00 | 1.00 | TRUE |
29 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MXD3 | 0.04 | 0.02 | blup | 40 | 0.03 | 2.8e-04 | -5.7 | -7.3 | 3.7e-13 | 0.48 | 0.02 | 0.96 | FALSE |
30 | The Cancer Genome Atlas | Thyroid Carcinoma | MXD3 | 0.05 | 0.04 | lasso | 5 | 0.04 | 1.8e-04 | -6.7 | -6.6 | 5.2e-11 | 0.53 | 0.19 | 0.69 | FALSE |