TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of leg (left)
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chr1:77,547,831-79,699,821
Best TWAS P=2.8e-11 · Best GWAS P=1.53e-14 conditioned to 5.06e-07
77.5M
78M
78.5M
79M
79.5M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
ROSMAP
Brain Pre-frontal Cortex
FAM73A
0.09
0.04
enet
19
0.06
9.6e-09
4.6
-6.7
2.8e-11
0.33
0.99
0.01
TRUE
1
GTEx
Cells Transformed fibroblasts
PTGFR
0.12
0.04
enet
17
0.04
4.7e-04
-5.0
6.5
1.1e-10
-0.26
0.96
0.00
TRUE
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
NEXN
0.03
0.01
blup
44
0.01
1.3e-02
4.4
-5.5
3.7e-08
0.23
0.02
0.09
FALSE
5
The Cancer Genome Atlas
Lung Adenocarcinoma
DNAJB4
0.04
0.04
lasso
2
0.04
1.2e-05
-5.5
5.5
4.3e-08
-0.45
0.00
1.00
FALSE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
NEXN
0.03
0.02
blup
44
0.03
6.6e-04
4.6
-5.4
5.9e-08
0.24
0.20
0.16
FALSE