Best TWAS P=1.4e-09 · Best GWAS P=2.65e-09 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | HEY2 | 0.15 | 0.20 | lasso | 10 | 0.21 | 6.7e-25 | 6.0 | 5.9 | 3.2e-09 | 1.00 | 0.01 | 0.99 | FALSE |
| 2 | GTEx | Breast Mammary Tissue (Female) | HINT3 | 0.39 | -0.01 | enet | 16 | 0.08 | 2.2e-03 | 3.8 | 5.2 | 2.4e-07 | 0.38 | 0.12 | 0.14 | FALSE |
| 3 | GTEx | Testis | HEY2 | 0.31 | 0.17 | lasso | 5 | 0.19 | 7.4e-09 | 5.9 | 6.1 | 1.4e-09 | 0.97 | 0.01 | 0.99 | TRUE |
| 4 | GTEx | Thyroid | HEY2 | 0.22 | 0.24 | lasso | 6 | 0.23 | 1.0e-17 | 5.9 | 6.0 | 1.9e-09 | 0.96 | 0.01 | 0.99 | FALSE |
| 5 | METSIM | Adipose | NCOA7 | 0.05 | 0.05 | enet | 5 | 0.05 | 1.9e-07 | -4.8 | -5.3 | 9.7e-08 | -0.66 | 0.72 | 0.26 | FALSE |
| 6 | ROSMAP | Brain Pre-frontal Cortex | HEY2 | 0.10 | 0.12 | enet | 15 | 0.13 | 9.8e-17 | -5.7 | 5.7 | 1.3e-08 | 0.95 | 0.02 | 0.98 | FALSE |
| 7 | The Cancer Genome Atlas | Thyroid Carcinoma | HEY2 | 0.03 | 0.04 | lasso | 3 | 0.02 | 3.8e-03 | -5.7 | 5.8 | 8.0e-09 | 0.91 | 0.01 | 0.97 | FALSE |