Best TWAS P=3.94e-08 · Best GWAS P=1.22e-06 conditioned to 0.0887
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | AP1S1 | 0.16 | 0.05 | lasso | 3 | 0.09 | 7.7e-10 | -3.6 | -5.2 | 2.2e-07 | 0.82 | 0.02 | 0.87 | FALSE |
| 2 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | VGF | 0.09 | 0.03 | enet | 13 | 0.04 | 7.1e-05 | -3.6 | -5.5 | 3.9e-08 | 0.65 | 0.00 | 0.14 | TRUE |