Best TWAS P=3.14e-10 · Best GWAS P=3.86e-08 conditioned to 0.0818
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | PPHLN1 | 0.11 | 0.11 | enet | 12 | 0.13 | 8.5e-11 | 5.3 | -6.3 | 3.1e-10 | 0.67 | 0.02 | 0.98 | TRUE |
2 | GTEx | Artery Tibial | PPHLN1 | 0.12 | 0.07 | lasso | 5 | 0.09 | 2.3e-07 | -4.6 | -5.3 | 1.2e-07 | 0.92 | 0.10 | 0.90 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | PPHLN1 | 0.17 | 0.10 | enet | 24 | 0.17 | 1.3e-12 | -4.3 | -6.1 | 9.2e-10 | 0.88 | 0.06 | 0.93 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | ZCRB1 | 0.09 | 0.03 | enet | 18 | 0.08 | 2.4e-06 | -4.6 | -5.1 | 2.8e-07 | 0.66 | 0.28 | 0.53 | FALSE |
5 | GTEx | Colon Sigmoid | ZCRB1 | 0.13 | 0.15 | lasso | 3 | 0.12 | 7.0e-05 | 5.0 | -5.3 | 9.2e-08 | 0.68 | 0.04 | 0.95 | FALSE |
6 | GTEx | Esophagus Muscularis | ZCRB1 | 0.13 | 0.10 | lasso | 2 | 0.08 | 2.4e-05 | -5.3 | -5.6 | 2.1e-08 | 0.97 | 0.01 | 0.99 | FALSE |
7 | GTEx | Lung | ZCRB1 | 0.10 | 0.14 | enet | 13 | 0.13 | 5.6e-10 | -5.3 | -5.5 | 4.5e-08 | 0.95 | 0.01 | 0.99 | FALSE |
8 | GTEx | Muscle Skeletal | ZCRB1 | 0.05 | 0.09 | lasso | 1 | 0.06 | 6.0e-07 | 5.1 | -5.1 | 2.7e-07 | 0.68 | 0.03 | 0.97 | FALSE |
9 | GTEx | Thyroid | GXYLT1 | 0.11 | 0.09 | enet | 20 | 0.12 | 2.8e-09 | -3.1 | -5.4 | 7.4e-08 | 0.69 | 0.83 | 0.13 | FALSE |
10 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZCRB1 | 0.04 | 0.01 | blup | 34 | 0.01 | 1.8e-02 | -4.1 | -5.4 | 8.3e-08 | 0.93 | 0.01 | 0.52 | FALSE |
11 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | PPHLN1 | 0.11 | 0.08 | blup | 109 | 0.07 | 1.3e-03 | 5.3 | -5.2 | 2.1e-07 | 0.44 | 0.03 | 0.85 | FALSE |