Best TWAS P=2.79e-32 · Best GWAS P=3.51e-32 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ACVR2B | 0.08 | 0.08 | enet | 15 | 0.09 | 9.6e-11 | 10.63 | -10.8 | 2.2e-27 | -0.88 | 0.70 | 0.30 | FALSE |
2 | GTEx | Adipose Subcutaneous | EXOG | 0.10 | 0.00 | enet | 12 | 0.00 | 1.3e-01 | 11.57 | 10.5 | 5.3e-26 | 0.68 | 0.02 | 0.78 | FALSE |
3 | GTEx | Brain Cerebellum | EXOG | 0.19 | 0.23 | enet | 4 | 0.21 | 7.7e-07 | 11.54 | 11.5 | 1.5e-30 | 0.99 | 0.04 | 0.94 | FALSE |
4 | GTEx | Brain Cerebellum | ACVR2B-AS1 | 0.25 | 0.07 | lasso | 6 | 0.10 | 8.3e-04 | 11.51 | 10.9 | 1.8e-27 | 0.91 | 0.02 | 0.95 | FALSE |
5 | GTEx | Brain Frontal Cortex BA9 | EXOG | 0.18 | 0.08 | lasso | 4 | 0.05 | 1.7e-02 | 11.73 | 11.7 | 8.3e-32 | 0.99 | 0.02 | 0.91 | FALSE |
6 | GTEx | Breast Mammary Tissue | EXOG | 0.08 | 0.06 | enet | 10 | 0.05 | 8.6e-04 | 8.60 | 10.8 | 3.6e-27 | 0.90 | 0.03 | 0.94 | FALSE |
7 | GTEx | Colon Transverse | XYLB | 0.08 | 0.03 | enet | 15 | 0.05 | 1.7e-03 | 11.73 | -9.9 | 6.0e-23 | -0.85 | 0.02 | 0.96 | FALSE |
8 | GTEx | Esophagus Mucosa | EXOG | 0.13 | 0.05 | lasso | 3 | 0.03 | 5.0e-03 | 11.57 | 11.6 | 4.1e-31 | 0.98 | 0.04 | 0.91 | FALSE |
9 | GTEx | Nerve Tibial | EXOG | 0.10 | 0.00 | lasso | 5 | 0.00 | 1.7e-01 | 11.57 | 10.4 | 3.8e-25 | 0.87 | 0.03 | 0.83 | FALSE |
10 | GTEx | Ovary | EXOG | 0.33 | 0.25 | lasso | 8 | 0.21 | 8.1e-06 | 10.43 | 11.1 | 1.3e-28 | 0.90 | 0.06 | 0.79 | FALSE |
11 | GTEx | Pancreas | XYLB | 0.14 | 0.15 | enet | 6 | 0.13 | 5.7e-06 | 7.39 | -7.0 | 3.7e-12 | -0.51 | 0.19 | 0.58 | FALSE |
12 | GTEx | Pancreas | EXOG | 0.22 | 0.08 | enet | 15 | 0.03 | 2.6e-02 | 11.75 | 10.4 | 2.6e-25 | 0.91 | 0.03 | 0.95 | FALSE |
13 | GTEx | Stomach | EXOG | 0.14 | 0.05 | lasso | 6 | 0.02 | 2.5e-02 | 11.54 | 11.7 | 1.2e-31 | 1.00 | 0.01 | 0.97 | FALSE |
14 | GTEx | Testis | EXOG | 0.35 | 0.28 | lasso | 5 | 0.26 | 8.1e-12 | 11.81 | 11.8 | 2.8e-32 | 1.00 | 0.01 | 0.99 | TRUE |
15 | GTEx | Thyroid | EXOG | 0.19 | 0.20 | lasso | 3 | 0.19 | 2.9e-14 | 11.51 | 11.5 | 8.5e-31 | 0.98 | 0.02 | 0.98 | FALSE |
16 | NTR | Blood | ACVR2B | 0.02 | 0.02 | lasso | 3 | 0.02 | 5.6e-07 | 10.43 | 11.4 | 7.3e-30 | 0.95 | 0.02 | 0.98 | FALSE |
17 | NTR | Blood | EXOG | 0.02 | 0.03 | lasso | 6 | 0.03 | 1.0e-09 | 10.63 | -11.0 | 2.5e-28 | -0.89 | 0.71 | 0.29 | FALSE |
18 | NTR | Blood | XYLB | 0.05 | 0.06 | lasso | 3 | 0.06 | 6.2e-18 | 10.43 | 10.5 | 5.3e-26 | 0.87 | 0.69 | 0.31 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | EXOG | 0.10 | 0.13 | lasso | 2 | 0.12 | 4.8e-15 | 11.55 | 11.0 | 3.0e-28 | 0.98 | 0.03 | 0.97 | FALSE |
20 | YFS | Blood | ACVR2B | 0.02 | 0.00 | blup | 447 | 0.00 | 2.4e-02 | 10.40 | 7.0 | 3.6e-12 | 0.66 | 0.05 | 0.78 | FALSE |
21 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | EXOG | 0.07 | 0.01 | blup | 56 | 0.04 | 4.6e-04 | 7.37 | 7.2 | 8.8e-13 | 0.68 | 0.02 | 0.76 | FALSE |
22 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | XYLB | 0.06 | 0.05 | blup | 82 | 0.04 | 5.2e-03 | 11.08 | -9.8 | 1.6e-22 | -0.85 | 0.04 | 0.58 | FALSE |
23 | The Cancer Genome Atlas | Colon Adenocarcinoma | EXOG | 0.22 | 0.00 | blup | 56 | 0.06 | 2.0e-04 | 6.15 | 7.3 | 2.3e-13 | 0.49 | 0.01 | 0.22 | FALSE |
24 | The Cancer Genome Atlas | Colon Adenocarcinoma | XYLB | 0.11 | 0.05 | blup | 82 | 0.05 | 4.7e-04 | 0.28 | -5.4 | 5.4e-08 | -0.59 | 0.02 | 0.55 | FALSE |
25 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | EXOG | 0.04 | 0.01 | blup | 56 | 0.03 | 2.2e-04 | 10.43 | 10.3 | 5.4e-25 | 0.82 | 0.02 | 0.87 | FALSE |
26 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EXOG | 0.08 | 0.02 | blup | 56 | 0.06 | 9.1e-08 | 11.79 | 9.2 | 5.2e-20 | 0.75 | 0.01 | 0.99 | FALSE |
27 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | XYLB | 0.03 | 0.03 | blup | 82 | 0.02 | 5.1e-03 | 11.66 | -10.7 | 7.2e-27 | -0.91 | 0.01 | 0.98 | FALSE |
28 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | EXOG | 0.14 | 0.09 | blup | 56 | 0.09 | 9.5e-06 | 11.51 | 11.0 | 3.4e-28 | 0.88 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | LOC100128640 | 0.09 | 0.05 | lasso | 2 | 0.03 | 1.7e-02 | 10.43 | -10.4 | 1.8e-25 | -0.86 | 0.02 | 0.49 | FALSE |
30 | The Cancer Genome Atlas | Lung Adenocarcinoma | EXOG | 0.06 | 0.01 | blup | 56 | 0.03 | 3.7e-04 | 7.37 | 6.2 | 4.6e-10 | 0.59 | 0.18 | 0.47 | FALSE |
31 | The Cancer Genome Atlas | Lung Adenocarcinoma | XYLB | 0.05 | 0.02 | blup | 82 | 0.02 | 1.4e-03 | 0.28 | -5.3 | 9.6e-08 | -0.51 | 0.09 | 0.10 | FALSE |
32 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EXOG | 0.02 | 0.02 | blup | 56 | 0.01 | 1.0e-02 | 11.34 | 11.8 | 4.2e-32 | 0.96 | 0.02 | 0.88 | FALSE |
33 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | XYLB | 0.05 | 0.03 | lasso | 4 | 0.02 | 2.4e-03 | 11.08 | -11.2 | 3.0e-29 | -0.93 | 0.02 | 0.97 | FALSE |
34 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | XYLB | 0.08 | 0.01 | enet | 16 | 0.05 | 4.3e-03 | 11.13 | -7.0 | 3.4e-12 | -0.69 | 0.04 | 0.60 | FALSE |
35 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | EXOG | 0.10 | 0.02 | blup | 56 | 0.03 | 2.1e-02 | 4.58 | 10.2 | 2.2e-24 | 0.82 | 0.02 | 0.59 | FALSE |
36 | The Cancer Genome Atlas | Prostate Adenocarcinoma | LOC100128640 | 0.08 | 0.02 | blup | 28 | 0.03 | 2.6e-04 | 11.73 | -10.1 | 3.7e-24 | -0.87 | 0.01 | 0.98 | FALSE |
37 | The Cancer Genome Atlas | Prostate Adenocarcinoma | XYLB | 0.05 | 0.06 | enet | 7 | 0.05 | 3.5e-06 | 11.62 | -10.8 | 4.0e-27 | -0.95 | 0.00 | 1.00 | FALSE |
38 | The Cancer Genome Atlas | Thyroid Carcinoma | ACVR2B | 0.02 | 0.00 | blup | 49 | 0.01 | 1.6e-02 | 11.23 | -11.2 | 2.4e-29 | -0.92 | 0.03 | 0.43 | FALSE |
39 | The Cancer Genome Atlas | Thyroid Carcinoma | EXOG | 0.11 | 0.05 | blup | 56 | 0.10 | 9.5e-10 | 11.57 | 9.9 | 3.4e-23 | 0.83 | 0.02 | 0.98 | FALSE |
40 | The Cancer Genome Atlas | Thyroid Carcinoma | LOC100128640 | 0.07 | 0.03 | blup | 28 | 0.03 | 1.0e-03 | 11.79 | -11.2 | 6.5e-29 | -0.96 | 0.01 | 0.98 | FALSE |
41 | The Cancer Genome Atlas | Thyroid Carcinoma | XYLB | 0.05 | 0.02 | blup | 82 | 0.03 | 7.2e-04 | 11.00 | -7.9 | 3.5e-15 | -0.73 | 0.06 | 0.91 | FALSE |