TWAS
hub
About
Usage
Models
Genes
Traits
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Traits
:
Impedance of arm (right)
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chr5:51,711,739-53,672,849
Best TWAS P=2.55e-15 · Best GWAS P=7.15e-33 conditioned to 9.1e-17
52M
52.5M
53M
53.5M
0
10
20
30
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
NDUFS4
0.05
0.02
enet
8
0.03
1.4e-04
8.24
7.9
2.6e-15
0.45
0.01
0.96
TRUE
2
GTEx
Artery Tibial
CTD-2366F13.1
0.15
0.10
enet
24
0.11
7.0e-09
3.31
5.3
1.0e-07
0.23
1.00
0.00
TRUE
1
CommonMind
Brain Pre-frontal Cortex
NDUFS4
0.13
0.03
bslmm
474
0.10
3.3e-12
-0.67
5.5
3.7e-08
0.32
0.87
0.13
FALSE
3
GTEx
Muscle Skeletal
NDUFS4
0.07
0.05
lasso
2
0.04
1.2e-04
6.24
-5.5
3.8e-08
-0.51
0.43
0.02
FALSE