TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of arm (left)
:
←
→
chr12:46,077,695-47,465,082
Best TWAS P=2.96e-20 · Best GWAS P=4.38e-19 conditioned to 0.0518
46M
46.2M
46.4M
46.6M
46.8M
47M
47.2M
47.4M
0
5
10
15
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
SLC38A2
0.10
0.06
blup
30
0.05
0.00083
8.8
-9.2
3.0e-20
-0.86
0.01
0.91
TRUE
1
METSIM
Adipose
SLC38A2
0.02
0.02
blup
341
0.01
0.00581
8.1
-7.6
3.6e-14
-0.90
0.06
0.90
FALSE
3
The Cancer Genome Atlas
Soft Tissue Sarcoma
SLC38A2
0.06
0.01
blup
30
0.03
0.00513
8.9
-7.1
1.6e-12
-0.92
0.02
0.74
FALSE