Best TWAS P=7.83e-10 · Best GWAS P=4.2e-09 conditioned to 7.15e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | LIME1 | 0.04 | 0.00 | bslmm | 439 | 0.01 | 3.3e-02 | 3.6 | -6.1 | 7.8e-10 | 0.35 | 0.05 | 0.81 | TRUE |
| 2 | YFS | Blood | SLC2A4RG | 0.03 | 0.02 | lasso | 11 | 0.02 | 4.2e-08 | -5.5 | -5.1 | 2.8e-07 | 0.15 | 0.02 | 0.98 | FALSE |
| 3 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LIME1 | 0.04 | 0.03 | lasso | 3 | 0.02 | 7.2e-04 | -5.5 | -5.7 | 9.8e-09 | 0.19 | 0.00 | 0.95 | FALSE |