Best TWAS P=6.54e-08 · Best GWAS P=3.63e-12 conditioned to 3.26e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DHFRL1 | 0.07 | 0.05 | enet | 17 | 0.05 | 2.5e-06 | 4.4 | -5.3 | 1.4e-07 | 0.53 | 0.05 | 0.91 | FALSE |
| 2 | The Cancer Genome Atlas | Thyroid Carcinoma | ARL13B | 0.03 | 0.00 | blup | 39 | 0.00 | 2.1e-01 | -5.6 | 5.4 | 6.5e-08 | -0.59 | 0.01 | 0.68 | TRUE |