TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat percentage (right)
:
←
→
chr8:91,866,730-92,477,035
Best TWAS P=2.6e-08 · Best GWAS P=1.21e-08 conditioned to 0.117
91.9M
92M
92.1M
92.2M
92.3M
92.4M
92.5M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Testicular Germ Cell Tumors
LRRC69
0.24
0.17
enet
14
0.18
7.0e-07
4.9
5.6
2.6e-08
0.90
0.02
0.98
TRUE
4
The Cancer Genome Atlas
Stomach Adenocarcinoma
LRRC69
0.09
0.08
blup
67
0.09
5.6e-07
5.3
5.3
1.2e-07
0.81
0.02
0.98
FALSE
2
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
LRRC69
0.02
0.01
blup
67
0.01
1.1e-02
5.2
5.3
1.4e-07
0.80
0.03
0.72
FALSE
3
The Cancer Genome Atlas
Prostate Adenocarcinoma
LRRC69
0.11
0.12
blup
67
0.11
2.1e-11
5.2
5.2
2.0e-07
0.79
0.03
0.97
FALSE
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
LRRC69
0.04
0.04
blup
69
0.05
1.3e-09
4.7
5.2
2.6e-07
0.71
0.04
0.96
FALSE