TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat-free mass (right)
:
←
→
chr9:111,008,699-112,581,047
Best TWAS P=9.45e-11 · Best GWAS P=3.17e-10 conditioned to 0.0063
111M
111.2M
111.4M
111.6M
111.8M
112M
112.2M
112.4M
112.6M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
CTNNAL1
0.09
0.00
blup
83
0.04
1.0e-04
2.8
6.5
9.4e-11
0.44
0.04
0.14
TRUE
2
NTR
Blood
C9orf5
0.05
0.02
enet
14
0.03
2.2e-10
4.0
-6.2
7.2e-10
-0.40
0.92
0.08
TRUE
1
GTEx
Spleen
CTNNAL1
0.66
0.06
enet
84
0.18
2.8e-05
-2.7
5.2
2.0e-07
0.46
0.11
0.46
FALSE
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
C9orf4
0.08
0.03
blup
80
0.02
9.8e-04
4.0
-5.2
2.5e-07
-0.31
0.11
0.75
FALSE