Best TWAS P=4.46e-09 · Best GWAS P=4.49e-10 conditioned to 0.00127
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | FIBP | 0.08 | 0.11 | enet | 20 | 0.12 | 8.1e-14 | 3.5 | 5.2 | 1.8e-07 | -0.42 | 1.00 | 0.00 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | EFEMP2 | 0.35 | 0.15 | enet | 5 | 0.09 | 2.2e-03 | 5.5 | 5.8 | 7.3e-09 | -0.49 | 0.09 | 0.74 | FALSE |
3 | GTEx | Brain Cerebellum | EFEMP2 | 0.45 | 0.40 | enet | 8 | 0.39 | 1.6e-12 | 5.3 | 5.6 | 2.6e-08 | -0.48 | 0.13 | 0.87 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | EFEMP2 | 0.06 | 0.06 | lasso | 3 | 0.07 | 7.8e-06 | 5.6 | 5.7 | 1.0e-08 | -0.45 | 0.13 | 0.84 | FALSE |
5 | GTEx | Colon Transverse | DPF2 | 0.19 | 0.01 | lasso | 4 | 0.05 | 1.6e-03 | 3.3 | 5.5 | 4.4e-08 | -0.08 | 0.09 | 0.06 | TRUE |
6 | METSIM | Adipose | EFEMP2 | 0.07 | 0.05 | lasso | 8 | 0.04 | 4.2e-06 | 4.8 | 5.2 | 2.2e-07 | -0.48 | 0.50 | 0.50 | FALSE |
7 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EFEMP2 | 0.04 | 0.02 | lasso | 5 | 0.02 | 1.4e-05 | 5.7 | 5.6 | 2.2e-08 | -0.48 | 0.08 | 0.91 | FALSE |
8 | The Cancer Genome Atlas | Glioblastoma Multiforme | CTSW | 0.16 | 0.18 | enet | 16 | 0.19 | 2.3e-06 | 5.1 | -5.9 | 4.5e-09 | 0.52 | 0.17 | 0.64 | TRUE |
9 | The Cancer Genome Atlas | Glioblastoma Multiforme | DKFZp761E198 | 0.14 | 0.00 | blup | 39 | 0.05 | 1.4e-02 | -4.7 | -5.2 | 2.1e-07 | 0.62 | 0.01 | 0.18 | FALSE |
10 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DKFZp761E198 | 0.07 | 0.02 | blup | 39 | 0.03 | 5.9e-04 | -4.8 | -5.8 | 8.3e-09 | 0.73 | 0.02 | 0.63 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DPF2 | 0.07 | 0.04 | blup | 28 | 0.04 | 2.9e-05 | -4.9 | 5.3 | 9.4e-08 | -0.16 | 0.00 | 0.96 | FALSE |
12 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DPF2 | 0.03 | 0.02 | blup | 28 | 0.02 | 1.2e-03 | -4.9 | 5.5 | 4.9e-08 | -0.15 | 0.00 | 0.90 | FALSE |
13 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EFEMP2 | 0.01 | 0.00 | blup | 45 | 0.01 | 3.0e-02 | 2.6 | 5.2 | 2.5e-07 | -0.45 | 0.04 | 0.16 | FALSE |
14 | The Cancer Genome Atlas | Lung Adenocarcinoma | FIBP | 0.02 | 0.01 | blup | 45 | 0.02 | 1.3e-03 | 3.7 | 5.3 | 1.3e-07 | -0.48 | 0.08 | 0.35 | FALSE |
15 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CAPN1 | 0.03 | 0.02 | blup | 39 | 0.02 | 2.1e-03 | -4.9 | -5.2 | 2.5e-07 | 0.18 | 0.00 | 0.93 | FALSE |
16 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | POLA2 | 0.12 | 0.03 | enet | 9 | 0.05 | 2.5e-04 | -4.9 | 5.2 | 1.9e-07 | -0.13 | 0.01 | 0.66 | FALSE |
17 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CTSW | 0.16 | 0.10 | enet | 24 | 0.15 | 1.9e-06 | 3.5 | -5.2 | 2.5e-07 | 0.44 | 0.62 | 0.14 | FALSE |
18 | The Cancer Genome Atlas | Soft Tissue Sarcoma | POLA2 | 0.09 | 0.06 | blup | 34 | 0.08 | 1.4e-05 | -5.1 | 5.2 | 1.6e-07 | -0.19 | 0.01 | 0.96 | FALSE |
19 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SNX32 | 0.08 | 0.08 | lasso | 2 | 0.10 | 1.5e-06 | 5.6 | 5.4 | 8.4e-08 | -0.42 | 0.16 | 0.83 | FALSE |
20 | The Cancer Genome Atlas | Thyroid Carcinoma | DPF2 | 0.05 | 0.02 | blup | 29 | 0.03 | 3.7e-04 | -4.9 | 5.3 | 9.9e-08 | -0.14 | 0.00 | 0.86 | FALSE |