Best TWAS P=2.47e-20 · Best GWAS P=7.51e-34 conditioned to 0.0105
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | C14orf39 | 0.08 | 0.05 | lasso | 8 | 0.06 | 2.1e-05 | 5.74 | -5.8 | 8.4e-09 | -0.41 | 0.92 | 0.02 | FALSE |
| 2 | GTEx | Esophagus Muscularis | C14orf39 | 0.10 | 0.02 | enet | 9 | 0.02 | 2.9e-02 | -0.99 | -5.8 | 8.9e-09 | -0.41 | 0.11 | 0.18 | TRUE |
| 3 | GTEx | Liver | MNAT1 | 0.21 | 0.00 | lasso | 4 | -0.01 | 5.4e-01 | -0.40 | -6.0 | 1.9e-09 | -0.44 | 0.08 | 0.20 | TRUE |
| 4 | GTEx | Muscle Skeletal | C14orf39 | 0.06 | 0.05 | lasso | 3 | 0.05 | 2.7e-05 | 5.74 | -8.7 | 2.4e-18 | -0.67 | 0.13 | 0.86 | FALSE |
| 5 | GTEx | Skin Not Sun Exposed Suprapubic | PCNXL4 | 0.15 | 0.05 | enet | 15 | 0.12 | 6.2e-07 | 3.17 | -9.2 | 2.5e-20 | -0.61 | 0.76 | 0.10 | TRUE |
| 6 | The Cancer Genome Atlas | Lung Adenocarcinoma | C14orf39 | 0.02 | 0.02 | blup | 37 | 0.02 | 4.2e-03 | 5.57 | -7.8 | 4.7e-15 | -0.55 | 0.06 | 0.43 | FALSE |
| 7 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | C14orf39 | 0.08 | 0.05 | blup | 37 | 0.05 | 4.2e-03 | 5.27 | -7.4 | 1.8e-13 | -0.51 | 0.09 | 0.38 | FALSE |
| 8 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C14orf39 | 0.08 | 0.09 | blup | 37 | 0.11 | 1.8e-11 | 5.65 | -7.2 | 4.6e-13 | -0.51 | 0.99 | 0.01 | FALSE |