TWAS
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Models
Genes
Traits
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Traits
:
Leg predicted mass (right)
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chr17:4,488,884-5,982,293
Best TWAS P=1.31e-08 · Best GWAS P=1.08e-06 conditioned to 0.44
4.6M
4.8M
5M
5.2M
5.4M
5.6M
5.8M
6M
0
1
2
3
4
5
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Glioblastoma Multiforme
RABEP1
0.23
0.13
blup
79
0.15
3.4e-05
4.4
-5.7
1.3e-08
-0.77
0.04
0.78
TRUE
1
GTEx
Esophagus Gastroesophageal Junction
RABEP1
0.19
-0.01
lasso
13
0.00
4.2e-01
4.2
-5.3
1.4e-07
-0.82
0.03
0.62
FALSE
2
The Cancer Genome Atlas
Glioblastoma Multiforme
NUP88
0.12
0.07
enet
12
0.09
1.2e-03
4.2
-5.1
2.8e-07
-0.78
0.02
0.51
FALSE