Best TWAS P=1.83e-08 · Best GWAS P=9.5e-08 conditioned to 0.643
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PDE5A | 0.05 | 0.04 | lasso | 2 | 0.03 | 8.1e-05 | 5.3 | -5.3 | 1.4e-07 | -0.94 | 0.05 | 0.94 | FALSE |
2 | GTEx | Artery Aorta | RP11-33B1.1 | 0.12 | 0.10 | lasso | 8 | 0.13 | 2.0e-07 | 5.0 | -5.2 | 2.1e-07 | -0.90 | 0.10 | 0.88 | FALSE |
3 | GTEx | Artery Tibial | RP11-33B1.4 | 0.14 | 0.10 | lasso | 7 | 0.06 | 8.5e-06 | 5.3 | 5.2 | 2.5e-07 | 0.89 | 0.01 | 0.99 | FALSE |
4 | GTEx | Brain Caudate basal ganglia | RP11-33B1.1 | 0.27 | 0.34 | lasso | 2 | 0.29 | 5.9e-09 | 5.3 | -5.3 | 8.6e-08 | -0.94 | 0.03 | 0.97 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | RP11-33B1.1 | 0.35 | 0.34 | lasso | 8 | 0.33 | 2.5e-09 | 5.3 | -5.4 | 8.5e-08 | -0.91 | 0.02 | 0.98 | FALSE |
6 | GTEx | Brain Cerebellum | RP11-33B1.1 | 0.31 | 0.30 | lasso | 11 | 0.32 | 2.9e-10 | 5.3 | -5.3 | 1.5e-07 | -0.89 | 0.05 | 0.95 | FALSE |
7 | GTEx | Brain Hypothalamus | RP11-33B1.1 | 0.40 | 0.24 | lasso | 6 | 0.23 | 4.5e-06 | 5.3 | -5.1 | 2.9e-07 | -0.89 | 0.04 | 0.93 | FALSE |
8 | GTEx | Brain Putamen basal ganglia | RP11-33B1.1 | 0.32 | 0.16 | lasso | 7 | 0.16 | 9.9e-05 | 5.3 | -5.6 | 2.4e-08 | -0.89 | 0.04 | 0.88 | FALSE |
9 | GTEx | Esophagus Muscularis | RP11-33B1.1 | 0.10 | 0.14 | lasso | 3 | 0.12 | 1.4e-07 | 5.3 | -5.2 | 1.7e-07 | -0.93 | 0.04 | 0.95 | FALSE |
10 | GTEx | Heart Atrial Appendage | RP11-33B1.1 | 0.15 | 0.08 | lasso | 3 | 0.10 | 4.0e-05 | 5.3 | -5.3 | 1.1e-07 | -0.95 | 0.03 | 0.97 | FALSE |
11 | GTEx | Heart Atrial Appendage | RP11-33B1.4 | 0.12 | 0.10 | lasso | 4 | 0.05 | 2.0e-03 | 5.3 | 5.6 | 1.8e-08 | 0.91 | 0.06 | 0.86 | TRUE |