TWAS
hub
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Usage
Models
Genes
Traits
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Traits
:
Leg fat mass (left)
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chr13:111,067,927-112,552,523
Best TWAS P=1.32e-10 · Best GWAS P=1.35e-13 conditioned to 5.13e-14
111M
111.2M
111.4M
111.6M
111.8M
112M
112.2M
112.4M
112.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Frontal Cortex BA9
TEX29
0.45
0.10
lasso
8
0.24
4.2e-07
-4.9
-6.4
1.3e-10
-0.01
0.11
0.12
TRUE
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
ARHGEF7
0.09
0.07
blup
142
0.08
3.1e-09
-4.9
6.2
6.3e-10
-0.04
1.00
0.00
TRUE
2
GTEx
Muscle Skeletal
ARHGEF7
0.14
0.05
enet
49
0.06
1.3e-06
-4.6
5.1
2.7e-07
-0.03
0.87
0.01
FALSE