Best TWAS P=1.02e-38 · Best GWAS P=8.05e-155 conditioned to 7.06e-77
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | FTO | 0.11 | 0.00 | bslmm | 739 | 0.02 | 1.6e-03 | -1.3 | 12.6 | 2.0e-36 | 0.38 | 0.09 | 0.55 | TRUE |
| 2 | GTEx | Muscle Skeletal | RBL2 | 0.11 | 0.00 | lasso | 5 | 0.00 | 2.9e-01 | 2.7 | -6.4 | 1.5e-10 | -0.10 | 0.28 | 0.23 | FALSE |
| 3 | GTEx | Testis | AKTIP | 0.19 | 0.00 | enet | 26 | 0.00 | 1.9e-01 | 2.2 | 13.0 | 1.0e-38 | 0.51 | 0.03 | 0.40 | TRUE |
| 4 | The Cancer Genome Atlas | Glioblastoma Multiforme | FTO | 0.27 | 0.16 | enet | 13 | 0.14 | 6.7e-05 | -2.3 | 10.2 | 1.4e-24 | 0.33 | 0.11 | 0.32 | TRUE |