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Traits
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Arm fat-free mass (right)
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chr2:182,305,254-184,594,404
Best TWAS P=1.58e-10 · Best GWAS P=2.17e-13 conditioned to 2.93e-05
182.5M
183M
183.5M
184M
184.5M
0
2
4
6
8
10
12
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Brain Hypothalamus
PDE1A
0.24
-0.01
enet
21
-0.01
7.6e-01
5.4
6.4
1.6e-10
-0.53
0.05
0.46
TRUE
3
GTEx
Liver
NCKAP1
0.50
-0.01
lasso
10
0.01
1.4e-01
4.9
5.9
4.7e-09
-0.07
0.05
0.14
TRUE
5
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
PDE1A
0.05
0.04
blup
206
0.04
5.0e-05
-5.0
5.5
3.8e-08
-0.41
0.64
0.03
FALSE
1
GTEx
Artery Tibial
FRZB
0.14
0.04
enet
16
0.05
9.6e-05
-2.6
-5.2
2.4e-07
0.27
0.92
0.01
FALSE
4
ROSMAP
Brain Pre-frontal Cortex
PDE1A
0.11
0.03
bslmm
526
0.06
3.2e-08
-7.0
5.2
2.6e-07
-0.49
0.02
0.98
FALSE