Best TWAS P=4.86e-08 · Best GWAS P=9.67e-11 conditioned to 0.000135
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Nerve Tibial | MAPK9 | 0.13 | 0.06 | lasso | 5 | 0.05 | 1.7e-04 | 3.4 | 5.3 | 9.1e-08 | -0.86 | 0.01 | 0.99 | FALSE |
| 2 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MAPK9 | 0.07 | 0.00 | blup | 96 | 0.02 | 8.4e-04 | 2.5 | 5.5 | 4.9e-08 | -0.66 | 0.02 | 0.54 | TRUE |
| 3 | The Cancer Genome Atlas | Thyroid Carcinoma | MAPK9 | 0.06 | 0.04 | lasso | 3 | 0.05 | 2.9e-05 | 5.6 | 5.3 | 1.3e-07 | -0.68 | 0.04 | 0.92 | FALSE |