Best TWAS P=6.07e-08 · Best GWAS P=3.59e-11 conditioned to 7.19e-12
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Brain Frontal Cortex BA9 | TEX29 | 0.45 | 0.10 | lasso | 8 | 0.24 | 4.2e-07 | -3.7 | -5.3 | 1.4e-07 | -0.01 | 0.09 | 0.29 | FALSE |
| 2 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ARHGEF7 | 0.09 | 0.07 | blup | 142 | 0.08 | 3.1e-09 | -4.1 | 5.4 | 6.1e-08 | -0.04 | 0.96 | 0.04 | TRUE |