TWAS
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Models
Genes
Traits
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Traits
:
Arm fat mass (left)
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chr13:27,300,215-28,717,392
Best TWAS P=9.63e-10 · Best GWAS P=2.68e-11 conditioned to 0.045
27.4M
27.6M
27.8M
28M
28.2M
28.4M
28.6M
28.8M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Nerve Tibial
AL137059.1
0.10
0.02
lasso
3
0.03
2.9e-03
4.6
-6.1
9.6e-10
0.71
0.02
0.94
TRUE
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
GTF3A
0.03
0.00
enet
8
0.01
2.3e-02
1.4
5.5
3.1e-08
-0.63
0.01
0.84
TRUE
1
GTEx
Muscle Skeletal
MTIF3
0.12
0.03
lasso
5
0.03
1.2e-03
-5.2
-5.5
3.4e-08
0.74
0.22
0.65
FALSE
3
GTEx
Testis
MTIF3
0.45
0.28
lasso
11
0.25
1.8e-11
4.6
-5.2
1.8e-07
0.49
0.96
0.04
FALSE
4
YFS
Blood
GTF3A
0.17
0.15
lasso
5
0.19
1.1e-58
3.4
-5.2
2.2e-07
0.44
1.00
0.00
FALSE