TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat mass (left)
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chr16:19,178,437-21,147,999
Best TWAS P=2.38e-12 · Best GWAS P=2.28e-11 conditioned to 1
19.5M
20M
20.5M
21M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Adipose Subcutaneous
GPRC5B
0.07
0.04
lasso
4
0.03
1.3e-03
-6.7
7.0
2.4e-12
-0.97
0.00
0.99
TRUE
2
GTEx
Skin Sun Exposed Lower leg
ACSM5
0.21
0.04
lasso
9
0.07
3.6e-06
1.1
-5.3
1.1e-07
0.16
0.28
0.33
TRUE
3
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
IQCK
0.03
0.03
lasso
3
0.02
7.2e-04
-5.2
-5.3
8.9e-08
0.93
0.01
0.98
FALSE