Best TWAS P=4.02e-10 · Best GWAS P=9.19e-09 conditioned to 0.0032
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | METTL21A | 0.10 | 0.02 | lasso | 4 | 0.02 | 1.6e-02 | -4.6 | 5.3 | 1.5e-07 | 0.32 | 0.18 | 0.23 | FALSE |
| 2 | GTEx | Brain Putamen basal ganglia | NDUFS1 | 0.16 | 0.06 | enet | 6 | 0.05 | 2.9e-02 | -4.2 | 5.2 | 2.0e-07 | 0.03 | 0.04 | 0.61 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | CREB1 | 0.15 | 0.00 | enet | 7 | 0.00 | 2.8e-01 | -4.7 | -6.2 | 4.0e-10 | -0.50 | 0.14 | 0.41 | TRUE |
| 4 | GTEx | Esophagus Gastroesophageal Junction | NDUFS1 | 0.16 | 0.09 | enet | 22 | 0.03 | 2.4e-02 | -4.5 | 5.2 | 2.3e-07 | 0.01 | 0.03 | 0.92 | FALSE |
| 5 | GTEx | Esophagus Mucosa | METTL21A | 0.10 | 0.10 | enet | 9 | 0.12 | 1.8e-08 | -4.6 | 5.2 | 2.6e-07 | 0.57 | 0.40 | 0.58 | FALSE |
| 6 | GTEx | Nerve Tibial | AC007383.4 | 0.14 | 0.06 | lasso | 6 | 0.05 | 3.0e-04 | -4.8 | 5.3 | 1.4e-07 | 0.01 | 0.03 | 0.96 | TRUE |
| 7 | GTEx | Testis | NDUFS1 | 0.15 | 0.08 | lasso | 6 | 0.08 | 2.1e-04 | -4.6 | 5.2 | 2.6e-07 | 0.02 | 0.05 | 0.84 | FALSE |
| 8 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CREB1 | 0.03 | 0.01 | blup | 64 | 0.01 | 2.5e-02 | -5.1 | -5.2 | 2.4e-07 | -0.49 | 0.09 | 0.53 | FALSE |
| 9 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FAM119A | 0.04 | 0.02 | blup | 51 | 0.03 | 1.0e-06 | -4.5 | 5.2 | 1.5e-07 | 0.64 | 0.03 | 0.95 | FALSE |