[Hub]/) : Traits : Trunk fat-free mass : ← →

chr6:41,005,502-42,715,323

Best TWAS P=1.71e-25 · Best GWAS P=4.18e-25 conditioned to 1.62e-05

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
30	The Cancer Genome Atlas	Colon Adenocarcinoma	MED20	0.05	0.00	blup	50	0.04	2.8e-03	6.71	10.4	1.7e-25	0.70	0.06	0.28	TRUE
34	The Cancer Genome Atlas	Liver Hepatocellular Carcinoma	MED20	0.09	0.07	lasso	5	0.07	3.4e-04	-9.21	10.2	2.6e-24	0.51	0.17	0.56	FALSE
36	The Cancer Genome Atlas	Stomach Adenocarcinoma	MED20	0.03	0.05	lasso	2	0.04	1.2e-03	-9.47	9.9	3.5e-23	0.44	0.11	0.07	FALSE
31	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	MED20	0.04	0.03	lasso	3	0.04	7.3e-05	-9.47	9.6	8.0e-22	0.45	0.55	0.05	FALSE
21	GTEx	Testis	MED20	0.13	0.03	lasso	6	0.00	2.0e-01	-9.21	9.5	1.7e-21	0.46	0.16	0.17	FALSE
6	GTEx	Cells Transformed fibroblasts	MED20	0.11	0.05	lasso	4	0.08	9.4e-07	-9.47	9.4	4.4e-21	0.46	0.84	0.11	FALSE
33	The Cancer Genome Atlas	Brain Lower Grade Glioma	MED20	0.09	0.08	enet	12	0.09	5.5e-10	7.42	8.9	4.9e-19	0.62	1.00	0.00	FALSE
17	GTEx	Lung	USP49	0.09	0.08	lasso	2	0.05	6.2e-05	-9.25	-8.8	8.5e-19	-0.33	0.83	0.03	FALSE
8	GTEx	Colon Transverse	MED20	0.17	0.01	enet	10	0.06	6.0e-04	7.35	8.8	8.8e-19	0.69	0.17	0.62	FALSE
29	The Cancer Genome Atlas	Breast Invasive Carcinoma	CCND3	0.04	0.00	blup	99	0.01	1.8e-03	-9.20	8.7	5.3e-18	0.45	0.02	0.10	FALSE
15	GTEx	Lung	BYSL	0.08	0.03	lasso	4	0.02	4.9e-03	8.62	-8.6	1.1e-17	-0.80	0.27	0.56	FALSE
7	GTEx	Cells Transformed fibroblasts	USP49	0.13	0.02	lasso	4	0.02	2.4e-02	-9.25	-8.5	1.4e-17	-0.37	0.28	0.03	FALSE
24	METSIM	Adipose	MED20	0.13	0.11	enet	27	0.11	2.3e-16	7.33	8.2	2.6e-16	0.61	1.00	0.00	FALSE
35	The Cancer Genome Atlas	Prostate Adenocarcinoma	MED20	0.04	0.06	enet	6	0.05	2.6e-06	6.71	8.1	7.5e-16	0.58	0.91	0.02	FALSE
27	YFS	Blood	CCND3	0.02	0.01	enet	13	0.02	2.3e-06	7.51	-7.9	3.0e-15	-0.55	0.72	0.22	FALSE
25	ROSMAP	Brain Pre-frontal Cortex	PGC	0.13	0.06	blup	520	0.06	3.2e-08	8.01	-7.7	9.6e-15	-0.58	0.97	0.03	FALSE
22	GTEx	Thyroid	MED20	0.05	0.05	lasso	2	0.02	8.1e-03	7.39	7.6	2.5e-14	0.61	0.50	0.36	FALSE
13	GTEx	Heart Left Ventricle	MED20	0.22	0.19	enet	8	0.12	5.8e-07	7.35	7.6	3.2e-14	0.61	1.00	0.00	FALSE
26	ROSMAP	Brain Pre-frontal Cortex	MED20	0.10	0.10	enet	21	0.09	6.0e-12	7.39	7.5	9.2e-14	0.61	1.00	0.00	FALSE
4	GTEx	Artery Tibial	MED20	0.14	0.11	lasso	2	0.09	9.7e-08	7.42	7.4	1.2e-13	0.60	0.99	0.01	FALSE
23	GTEx	Thyroid	FRS3	0.20	0.16	lasso	4	0.16	5.2e-12	8.01	7.4	1.2e-13	0.67	0.98	0.02	FALSE
10	GTEx	Esophagus Muscularis	MED20	0.15	0.05	lasso	7	0.04	1.0e-03	-6.91	7.3	2.0e-13	0.62	0.45	0.50	FALSE
2	GTEx	Adipose Subcutaneous	MED20	0.08	0.07	enet	9	0.05	4.7e-05	7.31	7.3	2.7e-13	0.61	0.96	0.01	FALSE
19	GTEx	Nerve Tibial	MED20	0.13	0.11	enet	8	0.10	1.5e-07	7.29	7.3	3.3e-13	0.58	1.00	0.00	FALSE
37	The Cancer Genome Atlas	Thyroid Carcinoma	BYSL	0.05	0.06	enet	7	0.06	4.3e-06	7.39	-7.3	3.9e-13	-0.56	0.82	0.09	FALSE
9	GTEx	Esophagus Mucosa	MED20	0.09	0.07	enet	10	0.02	2.7e-02	-6.96	7.2	4.6e-13	0.59	0.76	0.13	FALSE
11	GTEx	Heart Atrial Appendage	MED20	0.14	0.12	enet	11	0.09	5.9e-05	7.29	7.0	2.2e-12	0.58	0.84	0.09	FALSE
18	GTEx	Muscle Skeletal	MED20	0.16	0.15	lasso	4	0.16	6.7e-16	6.71	7.0	2.8e-12	0.60	1.00	0.00	FALSE
12	GTEx	Heart Left Ventricle	PRICKLE4	0.11	0.05	lasso	4	0.03	9.8e-03	6.71	-6.9	4.9e-12	-0.59	0.26	0.06	FALSE
28	YFS	Blood	MED20	0.04	0.03	lasso	5	0.03	3.6e-11	6.71	6.6	3.7e-11	0.61	1.00	0.00	FALSE
1	CommonMind	Brain Pre-frontal Cortex	MED20	0.15	0.11	blup	471	0.13	3.1e-15	-6.96	6.6	4.5e-11	0.61	1.00	0.00	FALSE
3	GTEx	Adipose Subcutaneous	FRS3	0.15	0.04	enet	22	0.04	5.9e-04	8.01	6.3	2.4e-10	0.57	0.20	0.56	FALSE
16	GTEx	Lung	MED20	0.10	0.01	lasso	4	0.00	2.7e-01	-0.83	6.0	2.7e-09	0.52	0.06	0.32	FALSE
5	GTEx	Cells EBV-transformed lymphocytes	MED20	0.25	0.01	lasso	5	0.07	3.0e-03	-6.82	5.9	3.4e-09	0.53	0.15	0.12	FALSE
20	GTEx	Spleen	MED20	0.44	0.13	enet	23	0.07	6.4e-03	7.42	5.9	4.8e-09	0.57	0.11	0.51	FALSE
14	GTEx	Liver	MED20	0.20	0.03	enet	54	0.08	3.4e-03	7.37	5.8	9.1e-09	0.39	0.17	0.19	FALSE
32	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	CCND3	0.09	0.04	enet	12	0.07	1.3e-08	-0.68	-5.4	8.4e-08	-0.36	0.95	0.02	FALSE