TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk predicted mass
:
←
→
chr16:57,799,648-59,354,452
Best TWAS P=9.36e-08 · Best GWAS P=2.54e-07 conditioned to 0.155
57.8M
58M
58.2M
58.4M
58.6M
58.8M
59M
59.2M
59.4M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
NDRG4
0.04
0.01
blup
71
0.01
1.2e-02
-1.9
5.3
9.4e-08
0.81
0.01
0.86
TRUE
2
YFS
Blood
CNOT1
0.10
0.12
bslmm
486
0.12
4.0e-37
5.1
5.3
9.8e-08
0.99
0.01
0.98
FALSE
1
GTEx
Heart Left Ventricle
NDRG4
0.18
0.13
lasso
8
0.18
9.2e-10
-3.6
5.1
2.7e-07
0.62
0.08
0.90
FALSE