TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk predicted mass
:
←
→
chr2:67,709,195-69,245,228
Best TWAS P=7.28e-11 · Best GWAS P=6.94e-11 conditioned to 1
67.8M
68M
68.2M
68.4M
68.6M
68.8M
69M
69.2M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Artery Tibial
RP11-474G23.2
0.17
0.14
lasso
3
0.12
2.3e-09
-6.5
-6.5
7.3e-11
0.97
0.00
1.00
TRUE
2
GTEx
Artery Tibial
PPP3R1
0.25
0.22
lasso
4
0.26
5.4e-20
-6.5
-6.5
8.0e-11
0.95
0.00
1.00
FALSE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
WDR92
0.04
0.01
blup
49
0.01
7.9e-03
-6.5
-6.4
1.3e-10
0.49
0.00
0.94
FALSE
1
GTEx
Artery Tibial
CNRIP1
0.08
0.00
enet
15
0.00
1.3e-01
1.4
-5.1
3.0e-07
0.34
0.06
0.51
FALSE