TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Relative age of first facial hair
:
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chr6:99,192,233-100,719,911
Best TWAS P=1.37e-10 · Best GWAS P=1.16e-09 conditioned to 0.0164
99.2M
99.4M
99.6M
99.8M
100M
100.2M
100.4M
100.6M
100.8M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
GTEx
Pancreas
RP1-199J3.5
0.26
0.13
lasso
17
0.14
2.1e-06
4.4
-6.4
1.4e-10
-0.08
0.86
0.11
TRUE
5
The Cancer Genome Atlas
Brain Lower Grade Glioma
CCNC
0.04
0.01
blup
46
0.01
1.5e-02
4.1
5.5
4.0e-08
0.70
0.00
0.76
TRUE
1
CommonMind
Brain Pre-frontal Cortex
USP45
0.26
0.12
enet
36
0.22
6.6e-26
3.2
-5.6
2.5e-08
-0.42
1.00
0.00
FALSE
2
GTEx
Brain Hypothalamus
RP1-199J3.5
0.41
-0.01
lasso
9
0.00
4.3e-01
-4.8
-5.4
5.4e-08
-0.08
0.09
0.08
FALSE
3
GTEx
Breast Mammary Tissue (Female)
RP1-199J3.5
0.30
0.04
enet
29
0.14
8.0e-05
4.5
-5.1
2.9e-07
-0.06
0.73
0.07
FALSE