660 significantly associated models · 100 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 10840905 | 11326788 | 1 | 1 | 9.6e-09 | 1.4e-36 | 1.8e-29 | 20 | MASP2 |
2 | 1 | 243402721 | 244254617 | 1 | 1 | 5.9e-09 | 8.0e-10 | 1.0e+00 | 100 | AKT3 |
3 | 2 | 27467598 | 28129391 | 2 | 2 | 1.0e-08 | 3.4e-08 | 1.0e+00 | 100 | FNDC4 SUPT7L |
4 | 2 | 222733842 | 224128542 | 1 | 1 | 2.2e-07 | 1.6e-13 | 5.4e-14 | -4 | RP11-16P6.1 |
5 | 2 | 232718042 | 234145080 | 1 | 1 | 8.2e-09 | 4.8e-08 | 3.6e-01 | 97 | EIF4E2 |
6 | 3 | 10617048 | 12457119 | 2 | 2 | 3.5e-10 | 4.2e-13 | 1.2e-02 | 88 | ATG7 VGLL4 |
7 | 3 | 49615624 | 52435860 | 13 | 3 | 1.2e-12 | 1.1e-10 | 4.0e-01 | 98 | HEMK1 RBM6 TEX264 |
8 | 4 | 80561055 | 82578407 | 1 | 1 | 1.8e-07 | 5.8e-13 | 2.4e-11 | 14 | C4orf22 |
9 | 4 | 94527983 | 95955095 | 1 | 1 | 1.3e-07 | 2.3e-08 | 1.0e+00 | 100 | HPGDS |
10 | 6 | 33856903 | 35362848 | 1 | 1 | 2.8e-08 | 4.3e-07 | 5.4e-01 | 98 | C6orf106 |
11 | 6 | 41058968 | 42598371 | 3 | 9 | 1.2e-12 | 9.6e-11 | 1.0e+00 | 100 | MED20 PRICKLE4 |
12 | 6 | 99192233 | 100719911 | 3 | 2 | 1.4e-10 | 1.2e-09 | 1.6e-02 | 84 | CCNC RP1-199J3.5 |
13 | 6 | 104478130 | 106230491 | 2 | 1 | 3.3e-21 | 5.1e-35 | 1.8e-15 | 58 | LIN28B |
14 | 7 | 130101373 | 131880252 | 2 | 4 | 6.6e-24 | 4.7e-45 | 1.0e-07 | 86 | MKLN1-AS2 |
15 | 10 | 17541614 | 19027696 | 1 | 1 | 1.3e-12 | 1.4e-09 | 4.3e-01 | 98 | SLC39A12 |
16 | 10 | 64195778 | 65629712 | 2 | 1 | 3.7e-08 | 1.6e-07 | 2.3e-01 | 95 | NRBF2 |
17 | 10 | 101975269 | 103362569 | 1 | 1 | 9.3e-08 | 1.3e-06 | 8.2e-01 | 100 | RP11-179B2.2 |
18 | 11 | 29646947 | 31048683 | 1 | 1 | 2.3e-07 | 2.7e-05 | 1.2e-02 | 64 | C11orf46 |
19 | 11 | 44038444 | 44580741 | 1 | 1 | 4.9e-17 | 1.4e-22 | 4.9e-07 | 74 | ALX4 |
20 | 11 | 122058476 | 123525464 | 2 | 1 | 6.9e-15 | 5.7e-12 | 2.0e-02 | 89 | C11orf63 |
21 | 12 | 64869118 | 66337026 | 1 | 1 | 4.8e-08 | 1.8e-09 | 9.0e-03 | 81 | LEMD3 |
22 | 12 | 120502726 | 122037099 | 1 | 1 | 2.0e-08 | 3.9e-08 | 2.3e-01 | 95 | SPPL3 |
23 | 14 | 24020127 | 25430242 | 4 | 1 | 1.0e-08 | 1.1e-09 | 2.3e-02 | 86 | ADCY4 |
24 | 15 | 27662957 | 28535266 | 1 | 1 | 7.8e-11 | 3.5e-33 | 6.1e-24 | 29 | HERC2 |
25 | 16 | 13697975 | 14759768 | 1 | 1 | 9.3e-14 | 1.5e-36 | 1.6e-24 | 34 | RP11-65J21.3 |
26 | 16 | 88858246 | 90172696 | 16 | 9 | 1.0e-17 | 2.0e-14 | NaN | NaN | AC092143.1 C16orf55 CDK10 DBNDD1 GAS8 MC1R SPATA33 |
27 | 17 | 42607368 | 46609918 | 25 | 2 | 2.6e-30 | 1.7e-28 | 1.0e+00 | 100 | LRRC37A4P MRPL10 |
28 | 17 | 54272304 | 55667722 | 1 | 1 | 6.4e-13 | 8.5e-27 | 9.7e-16 | 44 | MIR3614 |
29 | 17 | 63385561 | 64438011 | 1 | 1 | 2.0e-07 | 7.1e-09 | 8.3e-03 | 79 | CCDC46 |
30 | 19 | 3293593 | 3797612 | 1 | 1 | 6.0e-08 | 2.7e-06 | 5.3e-01 | 98 | C19orf28 |
31 | 21 | 39849553 | 41383143 | 4 | 1 | 7.4e-09 | 1.8e-08 | 1.2e-01 | 92 | PSMG1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 6 | 1.06 | 3.0 |
GTEx | Brain Hippocampus | 5 | 0.95 | 2.9 |
GTEx | Brain Hypothalamus | 8 | 1.36 | 2.9 |
GTEx | Small Intestine Terminal Ileum | 6 | 1.30 | 2.9 |
GTEx | Artery Coronary | 11 | 0.93 | 2.7 |
GTEx | Brain Cortex | 10 | 0.97 | 2.7 |
GTEx | Brain Nucleus accumbens basal ganglia | 7 | 0.81 | 2.7 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 2.7 |
GTEx | Ovary | 7 | 0.77 | 2.7 |
GTEx | Esophagus Gastroesophageal Junction | 11 | 0.76 | 2.6 |
GTEx | Vagina | 5 | 0.79 | 2.6 |
GTEx | Brain Frontal Cortex BA9 | 6 | 0.65 | 2.5 |
GTEx | Breast Mammary Tissue (Male) | 10 | 0.84 | 2.5 |
GTEx | Cells EBV-transformed lymphocytes | 11 | 0.77 | 2.5 |
GTEx | Stomach | 13 | 0.89 | 2.5 |
GTEx | Breast Mammary Tissue (Female) | 12 | 0.73 | 2.4 |
GTEx | Colon Sigmoid | 10 | 0.68 | 2.4 |
GTEx | Colon Transverse | 13 | 0.63 | 2.4 |
GTEx | Heart Atrial Appendage | 11 | 0.70 | 2.4 |
GTEx | Heart Left Ventricle | 11 | 0.72 | 2.4 |
GTEx | Liver | 6 | 0.84 | 2.4 |
GTEx | Prostate | 6 | 0.72 | 2.4 |
GTEx | Adipose Visceral Omentum | 11 | 0.54 | 2.3 |
GTEx | Brain Caudate basal ganglia | 6 | 0.65 | 2.3 |
GTEx | Brain Cerebellar Hemisphere | 9 | 0.60 | 2.3 |
GTEx | Breast Mammary Tissue | 9 | 0.46 | 2.3 |
GTEx | Pancreas | 12 | 0.74 | 2.3 |
GTEx | Pituitary | 5 | 0.45 | 2.3 |
GTEx | Skin Not Sun Exposed Suprapubic | 13 | 0.53 | 2.3 |
GTEx | Adipose Subcutaneous | 16 | 0.46 | 2.2 |
GTEx | Adrenal Gland | 7 | 0.48 | 2.2 |
GTEx | Brain Cerebellum | 11 | 0.55 | 2.2 |
GTEx | Esophagus Muscularis | 13 | 0.40 | 2.2 |
GTEx | Lung | 14 | 0.49 | 2.2 |
GTEx | Spleen | 9 | 0.64 | 2.2 |
GTEx | Testis | 19 | 0.60 | 2.2 |
GTEx | Thyroid | 17 | 0.43 | 2.2 |
The Cancer Genome Atlas | Esophageal Carcinoma | 3 | 0.44 | 2.2 |
GTEx | Artery Aorta | 13 | 0.44 | 2.1 |
GTEx | Cells Transformed fibroblasts | 14 | 0.33 | 2.1 |
GTEx | Esophagus Mucosa | 15 | 0.45 | 2.1 |
GTEx | Muscle Skeletal | 13 | 0.45 | 2.1 |
GTEx | Skin Sun Exposed Lower leg | 11 | 0.30 | 2.1 |
GTEx | Whole Blood | 9 | 0.45 | 2.1 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 5 | 0.49 | 2.1 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 2.1 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 3 | 0.43 | 2.1 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 2 | 0.39 | 2.1 |
GTEx | Artery Tibial | 13 | 0.35 | 2.0 |
GTEx | Nerve Tibial | 19 | 0.44 | 2.0 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.27 | 2.0 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 4 | 0.36 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 6 | 0.38 | 2.0 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 5 | 0.47 | 2.0 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 6 | 0.36 | 2.0 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 3 | 0.18 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 14 | 0.34 | 1.9 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 7 | 0.34 | 1.9 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 10 | 0.23 | 1.9 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 7 | 0.28 | 1.9 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 4 | 0.24 | 1.9 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 17 | 0.37 | 1.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.9 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.23 | 1.9 |
NTR | Blood | 4 | 0.17 | 1.8 |
ROSMAP | Brain Pre-frontal Cortex | 6 | 0.14 | 1.8 |
CommonMind | Brain Pre-frontal Cortex | 15 | 0.28 | 1.8 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 12 | 0.27 | 1.8 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 6 | 0.22 | 1.8 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 6 | 0.20 | 1.8 |
The Cancer Genome Atlas | Thyroid Carcinoma | 16 | 0.31 | 1.8 |
METSIM | Adipose | 7 | 0.15 | 1.7 |
YFS | Blood | 5 | 0.11 | 1.7 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 3 | 0.15 | 1.7 |