Best TWAS P=1.61e-11 · Best GWAS P=1.23e-11 conditioned to 0.00254
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RP11-250B2.6 | 0.07 | 0.04 | lasso | 4 | 0.05 | 4.4e-05 | 6.7 | -5.3 | 1.0e-07 | -0.92 | 0.01 | 0.98 | FALSE |
2 | GTEx | Adipose Visceral Omentum | RP11-250B2.6 | 0.16 | 0.05 | lasso | 6 | 0.06 | 7.8e-04 | 3.6 | -5.9 | 4.2e-09 | -0.66 | 0.05 | 0.88 | FALSE |
3 | GTEx | Artery Aorta | BCKDHB | 0.14 | 0.14 | lasso | 1 | 0.13 | 9.8e-08 | 6.1 | 6.1 | 8.1e-10 | 0.90 | 0.16 | 0.84 | FALSE |
4 | GTEx | Artery Coronary | BCKDHB | 0.29 | 0.05 | lasso | 27 | 0.11 | 1.7e-04 | 6.1 | 5.3 | 1.0e-07 | 0.62 | 0.06 | 0.85 | FALSE |
5 | GTEx | Artery Tibial | BCKDHB | 0.16 | 0.16 | lasso | 11 | 0.15 | 4.9e-12 | 6.1 | 6.0 | 2.0e-09 | 0.91 | 0.11 | 0.89 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | RP11-250B2.6 | 0.21 | 0.03 | enet | 37 | 0.13 | 4.7e-05 | 6.1 | -5.4 | 8.1e-08 | -0.57 | 0.04 | 0.74 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | BCKDHB | 0.16 | 0.02 | enet | 42 | 0.04 | 3.7e-04 | 6.7 | 6.7 | 1.6e-11 | 0.67 | 0.01 | 0.98 | TRUE |
8 | GTEx | Cells Transformed fibroblasts | RP11-250B2.6 | 0.11 | 0.01 | lasso | 7 | 0.00 | 1.4e-01 | -4.0 | -5.1 | 3.0e-07 | -0.78 | 0.02 | 0.94 | FALSE |
9 | GTEx | Colon Transverse | RP11-250B2.6 | 0.15 | 0.16 | lasso | 2 | 0.13 | 9.8e-07 | 6.7 | -6.5 | 8.6e-11 | -1.00 | 0.00 | 1.00 | FALSE |
10 | GTEx | Esophagus Mucosa | RP11-250B2.6 | 0.20 | 0.16 | lasso | 7 | 0.23 | 3.3e-15 | -4.0 | -5.7 | 9.3e-09 | -0.68 | 0.42 | 0.58 | FALSE |
11 | GTEx | Esophagus Muscularis | BCKDHB | 0.18 | 0.07 | enet | 25 | 0.06 | 2.4e-04 | 6.2 | 6.2 | 4.6e-10 | 0.85 | 0.12 | 0.88 | FALSE |
12 | GTEx | Heart Atrial Appendage | RP11-250B2.6 | 0.20 | 0.00 | enet | 17 | 0.03 | 2.6e-02 | -3.4 | -6.0 | 2.5e-09 | -0.25 | 0.07 | 0.34 | FALSE |
13 | GTEx | Lung | BCKDHB | 0.09 | 0.06 | enet | 10 | 0.05 | 1.8e-04 | 6.2 | 6.2 | 7.5e-10 | 0.90 | 0.16 | 0.83 | FALSE |
14 | GTEx | Lung | RP11-250B2.6 | 0.09 | 0.05 | enet | 16 | 0.07 | 5.3e-06 | 6.8 | -6.7 | 2.5e-11 | -0.80 | 0.00 | 1.00 | FALSE |
15 | GTEx | Nerve Tibial | BCKDHB | 0.18 | 0.11 | lasso | 9 | 0.10 | 2.4e-07 | 6.1 | 6.5 | 9.0e-11 | 0.92 | 0.04 | 0.96 | FALSE |
16 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-250B2.6 | 0.08 | 0.05 | lasso | 4 | 0.01 | 8.1e-02 | 6.8 | -6.2 | 4.2e-10 | -0.94 | 0.02 | 0.93 | FALSE |
17 | GTEx | Stomach | RP11-250B2.6 | 0.13 | 0.15 | lasso | 6 | 0.12 | 2.5e-06 | 6.7 | -6.5 | 5.7e-11 | -0.99 | 0.00 | 1.00 | FALSE |
18 | GTEx | Testis | RP11-250B2.6 | 0.09 | 0.05 | lasso | 6 | 0.04 | 6.9e-03 | 6.8 | -6.5 | 7.4e-11 | -0.94 | 0.02 | 0.96 | FALSE |
19 | GTEx | Thyroid | BCKDHB | 0.17 | 0.06 | lasso | 8 | 0.10 | 3.4e-08 | 6.8 | 6.7 | 1.8e-11 | 0.92 | 0.01 | 0.99 | FALSE |
20 | GTEx | Thyroid | RP11-250B2.6 | 0.11 | 0.10 | lasso | 2 | 0.07 | 3.2e-06 | 6.7 | -6.7 | 1.8e-11 | -1.00 | 0.00 | 1.00 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | BCKDHB | 0.18 | 0.13 | lasso | 6 | 0.14 | 2.9e-17 | 6.1 | 5.7 | 1.1e-08 | 0.88 | 0.18 | 0.82 | FALSE |
22 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BCKDHB | 0.19 | 0.02 | blup | 137 | 0.06 | 2.6e-03 | 6.1 | 5.5 | 4.2e-08 | 0.78 | 0.02 | 0.34 | FALSE |