Best TWAS P=1.19e-10 · Best GWAS P=1.22e-08 conditioned to 0.0771
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Visceral Omentum | TCP11L1 | 0.42 | 0.30 | enet | 51 | 0.31 | 1.7e-16 | -4.8 | -5.3 | 1.3e-07 | -0.64 | 0.12 | 0.87 | FALSE |
2 | GTEx | Brain Caudate basal ganglia | PIGCP1 | 0.18 | 0.10 | lasso | 3 | 0.09 | 1.4e-03 | -4.7 | -5.2 | 2.6e-07 | -0.69 | 0.05 | 0.63 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | TCP11L1 | 0.17 | 0.07 | enet | 15 | 0.14 | 2.5e-10 | 4.1 | -6.4 | 1.2e-10 | -0.68 | 0.20 | 0.79 | TRUE |
4 | GTEx | Cells Transformed fibroblasts | PIGCP1 | 0.31 | 0.12 | lasso | 5 | 0.17 | 8.4e-13 | 4.1 | -5.5 | 5.1e-08 | -0.81 | 0.11 | 0.89 | FALSE |
5 | GTEx | Esophagus Gastroesophageal Junction | TCP11L1 | 0.17 | 0.10 | lasso | 12 | 0.15 | 4.5e-06 | -4.9 | -5.1 | 2.9e-07 | -0.68 | 0.15 | 0.82 | FALSE |
6 | GTEx | Esophagus Mucosa | PIGCP1 | 0.17 | 0.07 | enet | 12 | 0.14 | 2.3e-09 | -4.9 | -5.5 | 5.1e-08 | -0.74 | 0.08 | 0.92 | FALSE |
7 | GTEx | Ovary | PIGCP1 | 0.39 | 0.21 | lasso | 11 | 0.20 | 1.5e-05 | -4.7 | -5.5 | 3.8e-08 | -0.78 | 0.05 | 0.91 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | PIGCP1 | 0.17 | 0.16 | lasso | 4 | 0.15 | 1.5e-12 | -4.8 | -5.2 | 2.1e-07 | -0.70 | 0.13 | 0.86 | FALSE |
9 | The Cancer Genome Atlas | Glioblastoma Multiforme | TCP11L1 | 0.10 | 0.06 | enet | 17 | 0.04 | 2.1e-02 | -4.7 | -5.5 | 4.9e-08 | -0.68 | 0.05 | 0.43 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LOC283267 | 0.05 | 0.02 | blup | 50 | 0.04 | 6.0e-05 | -4.8 | -6.0 | 2.1e-09 | -0.82 | 0.02 | 0.96 | FALSE |
11 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | TCP11L1 | 0.36 | 0.13 | enet | 35 | 0.19 | 3.9e-08 | 4.0 | -5.2 | 2.0e-07 | -0.50 | 0.15 | 0.82 | FALSE |
12 | The Cancer Genome Atlas | Thyroid Carcinoma | TCP11L1 | 0.11 | 0.04 | blup | 76 | 0.08 | 1.2e-08 | -4.8 | -6.3 | 3.5e-10 | -0.87 | 0.02 | 0.98 | FALSE |