Best TWAS P=1.33e-08 · Best GWAS P=2.76e-08 conditioned to 1.7e-07
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ROM1 | 0.25 | 0.17 | lasso | 3 | 0.18 | 1.5e-14 | 5.2 | -5.2 | 1.7e-07 | -0.07 | 0.01 | 0.99 | FALSE |
2 | GTEx | Adipose Visceral Omentum | ROM1 | 0.29 | 0.16 | lasso | 8 | 0.23 | 3.7e-12 | 5.0 | -5.4 | 6.7e-08 | -0.06 | 0.02 | 0.98 | FALSE |
3 | GTEx | Artery Aorta | ROM1 | 0.18 | 0.17 | lasso | 7 | 0.16 | 3.3e-09 | 5.0 | -5.1 | 3.0e-07 | -0.06 | 0.02 | 0.98 | FALSE |
4 | GTEx | Lung | ROM1 | 0.25 | 0.18 | enet | 13 | 0.20 | 2.2e-15 | 5.2 | -5.3 | 1.3e-07 | -0.06 | 0.02 | 0.98 | FALSE |
5 | GTEx | Lung | EML3 | 0.07 | 0.04 | lasso | 3 | 0.01 | 2.5e-02 | 5.1 | 5.1 | 2.9e-07 | 0.07 | 0.02 | 0.95 | FALSE |
6 | GTEx | Nerve Tibial | EML3 | 0.17 | 0.10 | lasso | 4 | 0.09 | 3.9e-07 | 5.1 | 5.2 | 1.7e-07 | 0.06 | 0.02 | 0.98 | FALSE |
7 | GTEx | Ovary | ROM1 | 0.25 | 0.00 | lasso | 5 | 0.00 | 3.3e-01 | 4.7 | -5.2 | 2.2e-07 | -0.05 | 0.02 | 0.76 | FALSE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | EML3 | 0.20 | 0.19 | lasso | 3 | 0.24 | 2.7e-13 | 5.1 | 5.2 | 2.2e-07 | 0.06 | 0.02 | 0.98 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | ROM1 | 0.13 | 0.11 | lasso | 4 | 0.10 | 9.7e-09 | 5.2 | -5.2 | 1.9e-07 | -0.07 | 0.01 | 0.98 | FALSE |
10 | GTEx | Stomach | EML3 | 0.11 | 0.04 | enet | 5 | 0.03 | 2.1e-02 | 4.8 | 5.2 | 1.8e-07 | 0.07 | 0.02 | 0.85 | FALSE |
11 | GTEx | Testis | EML3 | 0.27 | 0.22 | enet | 15 | 0.29 | 2.7e-13 | 5.1 | 5.2 | 2.4e-07 | 0.06 | 0.02 | 0.98 | FALSE |
12 | GTEx | Thyroid | ROM1 | 0.17 | 0.16 | lasso | 8 | 0.16 | 3.6e-12 | 5.1 | -5.2 | 1.9e-07 | -0.07 | 0.01 | 0.98 | FALSE |
13 | GTEx | Thyroid | EML3 | 0.10 | 0.11 | lasso | 4 | 0.10 | 5.9e-08 | 5.1 | 5.2 | 2.2e-07 | 0.07 | 0.01 | 0.98 | FALSE |
14 | YFS | Blood | EML3 | 0.20 | 0.31 | lasso | 12 | 0.33 | 1.3e-110 | 5.2 | 5.2 | 2.0e-07 | 0.07 | 0.01 | 0.99 | FALSE |
15 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | EEF1G | 0.04 | 0.05 | lasso | 1 | 0.04 | 1.1e-04 | 5.2 | -5.2 | 2.1e-07 | -0.08 | 0.01 | 0.97 | FALSE |
16 | The Cancer Genome Atlas | Breast Invasive Carcinoma | EML3 | 0.02 | 0.02 | lasso | 4 | 0.02 | 2.5e-05 | 5.2 | 5.2 | 1.5e-07 | 0.07 | 0.01 | 0.98 | FALSE |
17 | The Cancer Genome Atlas | Colon Adenocarcinoma | EML3 | 0.07 | 0.03 | blup | 29 | 0.05 | 6.5e-04 | 4.7 | 5.3 | 8.9e-08 | 0.06 | 0.02 | 0.88 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EEF1G | 0.11 | 0.12 | blup | 27 | 0.13 | 5.5e-14 | 5.2 | -5.1 | 2.7e-07 | -0.06 | 0.02 | 0.98 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | EML3 | 0.04 | 0.06 | lasso | 3 | 0.06 | 1.7e-07 | 5.1 | 5.2 | 2.7e-07 | 0.07 | 0.01 | 0.99 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EEF1G | 0.06 | 0.07 | blup | 27 | 0.07 | 8.1e-09 | 5.0 | -5.3 | 1.3e-07 | -0.07 | 0.02 | 0.98 | FALSE |
21 | The Cancer Genome Atlas | Brain Lower Grade Glioma | EML3 | 0.03 | 0.04 | blup | 28 | 0.03 | 7.6e-05 | 5.2 | 5.4 | 8.1e-08 | 0.07 | 0.01 | 0.98 | FALSE |
22 | The Cancer Genome Atlas | Lung Adenocarcinoma | EML3 | 0.03 | 0.03 | blup | 28 | 0.03 | 8.4e-05 | 5.0 | 5.5 | 4.6e-08 | 0.06 | 0.02 | 0.98 | FALSE |
23 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | EML3 | 0.04 | 0.05 | blup | 27 | 0.05 | 3.5e-06 | 5.2 | 5.3 | 1.2e-07 | 0.06 | 0.01 | 0.99 | FALSE |
24 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | EEF1G | 0.08 | 0.08 | blup | 27 | 0.05 | 3.6e-03 | 5.0 | -5.3 | 1.1e-07 | -0.07 | 0.02 | 0.93 | FALSE |
25 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | EEF1G | 0.08 | 0.00 | blup | 27 | 0.04 | 1.3e-02 | 5.0 | -5.4 | 8.1e-08 | -0.06 | 0.01 | 0.82 | FALSE |
26 | The Cancer Genome Atlas | Prostate Adenocarcinoma | EML3 | 0.09 | 0.14 | lasso | 1 | 0.14 | 3.4e-14 | 5.2 | 5.2 | 2.1e-07 | 0.08 | 0.01 | 0.99 | FALSE |
27 | The Cancer Genome Atlas | Stomach Adenocarcinoma | EEF1G | 0.05 | 0.07 | blup | 27 | 0.07 | 1.7e-05 | 4.8 | -5.4 | 7.0e-08 | -0.07 | 0.02 | 0.98 | FALSE |
28 | The Cancer Genome Atlas | Stomach Adenocarcinoma | ROM1 | 0.05 | 0.08 | lasso | 3 | 0.08 | 3.1e-06 | 5.1 | -5.2 | 2.2e-07 | -0.07 | 0.01 | 0.99 | FALSE |
29 | The Cancer Genome Atlas | Thyroid Carcinoma | EML3 | 0.11 | 0.10 | blup | 28 | 0.12 | 2.3e-11 | 5.2 | 5.7 | 1.3e-08 | 0.06 | 0.02 | 0.98 | TRUE |