Best TWAS P=9.65e-10 · Best GWAS P=2.67e-09 conditioned to 0.0341
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellar Hemisphere | RP11-316M1.12 | 0.31 | 0.37 | lasso | 4 | 0.39 | 4.5e-11 | 4.1 | -5.1 | 2.8e-07 | -0.73 | 0.26 | 0.72 | FALSE |
2 | GTEx | Brain Hypothalamus | RP11-316M1.12 | 0.14 | 0.03 | lasso | 6 | 0.02 | 9.9e-02 | 5.1 | -5.6 | 1.7e-08 | -0.81 | 0.08 | 0.30 | FALSE |
3 | GTEx | Breast Mammary Tissue (Male) | SETDB1 | 0.13 | 0.00 | enet | 7 | 0.04 | 3.8e-02 | 5.1 | -5.7 | 1.1e-08 | -0.50 | 0.06 | 0.20 | FALSE |
4 | GTEx | Breast Mammary Tissue (Male) | RP11-54A4.2 | 0.07 | 0.01 | enet | 2 | 0.03 | 7.4e-02 | -5.1 | -5.3 | 1.1e-07 | -0.74 | 0.03 | 0.25 | FALSE |
5 | GTEx | Esophagus Muscularis | CTSS | 0.05 | 0.04 | enet | 12 | 0.06 | 1.2e-04 | 4.6 | 6.1 | 1.4e-09 | 0.71 | 0.10 | 0.85 | TRUE |
6 | GTEx | Muscle Skeletal | CTSS | 0.04 | 0.01 | enet | 13 | 0.03 | 1.4e-03 | 5.4 | 5.6 | 2.2e-08 | 0.81 | 0.06 | 0.88 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | ANXA9 | 0.11 | 0.12 | lasso | 2 | 0.13 | 2.0e-07 | -4.9 | 5.6 | 2.5e-08 | 0.58 | 0.11 | 0.82 | FALSE |
8 | GTEx | Skin Sun Exposed Lower leg | ANXA9 | 0.12 | 0.04 | lasso | 3 | 0.08 | 3.8e-07 | -4.4 | 5.3 | 9.3e-08 | 0.57 | 0.18 | 0.81 | FALSE |
9 | GTEx | Testis | CTSK | 0.07 | 0.01 | enet | 19 | 0.01 | 1.2e-01 | 3.6 | 5.3 | 1.3e-07 | 0.75 | 0.18 | 0.48 | FALSE |
10 | GTEx | Thyroid | ARNT | 0.08 | 0.10 | lasso | 10 | 0.10 | 7.8e-08 | -4.8 | 5.3 | 1.2e-07 | 0.91 | 0.02 | 0.98 | FALSE |
11 | GTEx | Thyroid | CTSS | 0.15 | 0.12 | enet | 30 | 0.18 | 2.4e-13 | 4.4 | 5.4 | 7.7e-08 | 0.71 | 0.62 | 0.34 | FALSE |
12 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | PPIAL4C | 0.06 | 0.03 | enet | 6 | 0.04 | 1.3e-04 | -5.1 | -6.1 | 9.7e-10 | -0.03 | 0.00 | 0.64 | TRUE |
13 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CTSS | 0.02 | 0.01 | enet | 4 | 0.01 | 2.8e-03 | 4.3 | 5.6 | 2.8e-08 | 0.73 | 0.02 | 0.76 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CTSS | 0.04 | 0.01 | enet | 4 | 0.03 | 4.7e-04 | 4.6 | 5.4 | 6.9e-08 | 0.67 | 0.02 | 0.88 | FALSE |
15 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CTSS | 0.29 | 0.08 | lasso | 3 | 0.08 | 1.5e-09 | -4.9 | 5.2 | 2.1e-07 | 0.52 | 0.00 | 0.99 | FALSE |
16 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | CTSS | 0.16 | 0.08 | enet | 8 | 0.07 | 1.6e-05 | -4.9 | 5.7 | 9.1e-09 | 0.69 | 0.01 | 0.96 | FALSE |
17 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GOLPH3L | 0.03 | 0.01 | blup | 49 | 0.01 | 2.2e-02 | 4.3 | -5.3 | 1.5e-07 | -0.71 | 0.04 | 0.50 | FALSE |