Best TWAS P=1.76e-09 · Best GWAS P=2.62e-10 conditioned to 0.0186
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | USP36 | 0.14 | 0.13 | lasso | 3 | 0.13 | 1.7e-15 | 5.7 | -5.9 | 3.9e-09 | -0.96 | 0.02 | 0.98 | FALSE |
2 | GTEx | Adipose Subcutaneous | CYTH1 | 0.13 | 0.03 | lasso | 5 | 0.04 | 5.7e-04 | 5.7 | 5.2 | 2.2e-07 | 0.84 | 0.08 | 0.67 | FALSE |
3 | GTEx | Brain Cerebellum | USP36 | 0.31 | 0.20 | enet | 18 | 0.13 | 9.7e-05 | 5.4 | -5.3 | 1.5e-07 | -0.79 | 0.04 | 0.89 | FALSE |
4 | GTEx | Brain Nucleus accumbens basal ganglia | USP36 | 0.36 | 0.23 | lasso | 5 | 0.20 | 4.8e-06 | 6.1 | -6.0 | 2.3e-09 | -0.98 | 0.02 | 0.97 | FALSE |
5 | GTEx | Esophagus Mucosa | USP36 | 0.11 | 0.04 | enet | 13 | 0.06 | 1.1e-04 | 6.0 | -5.8 | 6.9e-09 | -0.88 | 0.02 | 0.98 | FALSE |
6 | GTEx | Esophagus Muscularis | USP36 | 0.18 | 0.16 | lasso | 3 | 0.08 | 2.5e-05 | 5.7 | 5.2 | 2.2e-07 | 0.87 | 0.02 | 0.98 | FALSE |
7 | GTEx | Muscle Skeletal | CYTH1 | 0.13 | 0.12 | lasso | 3 | 0.13 | 2.5e-12 | 5.7 | 5.4 | 7.9e-08 | 0.93 | 0.11 | 0.89 | FALSE |
8 | GTEx | Testis | USP36 | 0.32 | 0.24 | lasso | 6 | 0.26 | 6.2e-12 | 4.4 | -5.4 | 8.6e-08 | -0.93 | 0.05 | 0.95 | FALSE |
9 | GTEx | Thyroid | CYTH1 | 0.24 | 0.07 | lasso | 11 | 0.06 | 3.4e-05 | 5.4 | 5.7 | 1.3e-08 | 0.85 | 0.13 | 0.86 | FALSE |
10 | The Cancer Genome Atlas | Brain Lower Grade Glioma | USP36 | 0.04 | 0.00 | blup | 57 | 0.01 | 2.9e-02 | 6.0 | -6.0 | 1.8e-09 | -0.83 | 0.01 | 0.54 | TRUE |