Best TWAS P=1.46e-08 · Best GWAS P=7.83e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | IPO11 | 0.08 | 0.02 | lasso | 4 | 0.01 | 9.3e-02 | 5.6 | 5.6 | 1.8e-08 | 0.99 | 0.02 | 0.93 | FALSE |
2 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DIMT1L | 0.09 | 0.04 | lasso | 3 | 0.04 | 3.0e-08 | 5.5 | 5.4 | 6.4e-08 | 0.87 | 0.01 | 0.99 | FALSE |
3 | The Cancer Genome Atlas | Breast Invasive Carcinoma | IPO11 | 0.09 | 0.06 | blup | 127 | 0.07 | 1.7e-13 | 5.5 | 5.6 | 1.7e-08 | 0.92 | 0.02 | 0.98 | FALSE |
4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KIF2A | 0.05 | 0.02 | blup | 71 | 0.02 | 5.4e-06 | 5.6 | 5.3 | 1.0e-07 | 0.85 | 0.01 | 0.99 | FALSE |
5 | The Cancer Genome Atlas | Esophageal Carcinoma | IPO11 | 0.14 | 0.01 | lasso | 12 | 0.01 | 1.1e-01 | 5.6 | 5.7 | 1.5e-08 | 0.98 | 0.02 | 0.87 | TRUE |
6 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | DIMT1L | 0.26 | 0.13 | lasso | 1 | 0.10 | 2.3e-06 | 5.5 | 5.5 | 3.8e-08 | 0.92 | 0.01 | 0.99 | FALSE |
7 | The Cancer Genome Atlas | Lung Adenocarcinoma | IPO11 | 0.06 | 0.03 | lasso | 3 | 0.03 | 4.2e-04 | 5.6 | 5.6 | 1.6e-08 | 0.96 | 0.02 | 0.94 | FALSE |
8 | The Cancer Genome Atlas | Lung Adenocarcinoma | KIF2A | 0.06 | 0.02 | lasso | 1 | 0.01 | 3.9e-02 | 5.6 | 5.6 | 2.0e-08 | 0.92 | 0.01 | 0.87 | FALSE |
9 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IPO11 | 0.08 | 0.04 | blup | 127 | 0.05 | 4.2e-06 | 5.6 | 5.6 | 2.5e-08 | 0.98 | 0.02 | 0.98 | FALSE |
10 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | KIF2A | 0.05 | 0.03 | lasso | 2 | 0.02 | 1.7e-03 | 5.6 | 5.5 | 4.1e-08 | 0.92 | 0.01 | 0.96 | FALSE |
11 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DIMT1L | 0.33 | 0.15 | lasso | 6 | 0.13 | 6.0e-04 | 5.5 | 5.5 | 4.0e-08 | 0.96 | 0.01 | 0.80 | FALSE |
12 | The Cancer Genome Atlas | Stomach Adenocarcinoma | IPO11 | 0.14 | 0.05 | lasso | 3 | 0.03 | 1.6e-03 | 5.8 | 5.4 | 6.5e-08 | 0.91 | 0.02 | 0.95 | FALSE |