Best TWAS P=4.49e-16 · Best GWAS P=7.85e-15 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | METSIM | Adipose | SLC5A11 | 0.23 | 0.28 | lasso | 10 | 0.28 | 1.6e-42 | -7.67 | -7.6 | 2.4e-14 | 0.97 | 0.01 | 0.99 | FALSE |
| 2 | NTR | Blood | TNRC6A | 0.03 | 0.00 | bslmm | 459 | 0.00 | 2.5e-02 | 0.99 | -5.5 | 4.1e-08 | 0.44 | 0.06 | 0.15 | FALSE |
| 3 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | SLC5A11 | 0.17 | 0.21 | lasso | 4 | 0.21 | 1.7e-17 | -7.15 | -7.4 | 1.4e-13 | 0.96 | 0.01 | 0.99 | FALSE |
| 4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SLC5A11 | 0.12 | 0.17 | enet | 9 | 0.18 | 1.1e-35 | -7.66 | -7.4 | 1.5e-13 | 0.96 | 0.00 | 1.00 | FALSE |
| 5 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | SLC5A11 | 0.27 | 0.24 | lasso | 6 | 0.24 | 4.5e-12 | -7.65 | -7.8 | 6.0e-15 | 0.97 | 0.00 | 1.00 | FALSE |
| 6 | The Cancer Genome Atlas | Colon Adenocarcinoma | SLC5A11 | 0.27 | 0.21 | lasso | 2 | 0.20 | 5.2e-12 | -7.65 | -7.6 | 2.0e-14 | 0.97 | 0.00 | 1.00 | FALSE |
| 7 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SLC5A11 | 0.13 | 0.15 | enet | 8 | 0.15 | 6.6e-17 | -7.77 | -6.7 | 2.0e-11 | 0.92 | 0.00 | 1.00 | FALSE |
| 8 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SLC5A11 | 0.07 | 0.07 | enet | 7 | 0.06 | 1.7e-07 | -7.77 | -7.2 | 4.7e-13 | 0.95 | 0.00 | 1.00 | FALSE |
| 9 | The Cancer Genome Atlas | Lung Adenocarcinoma | SLC5A11 | 0.14 | 0.20 | enet | 9 | 0.20 | 2.2e-23 | -7.68 | -7.5 | 5.0e-14 | 0.98 | 0.00 | 1.00 | FALSE |
| 10 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SLC5A11 | 0.06 | 0.05 | lasso | 1 | 0.05 | 4.9e-06 | -7.68 | -7.7 | 1.5e-14 | 0.97 | 0.00 | 1.00 | FALSE |
| 11 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | SLC5A11 | 0.14 | 0.02 | blup | 62 | 0.07 | 1.4e-05 | -7.66 | -6.8 | 1.2e-11 | 0.71 | 0.00 | 0.98 | FALSE |
| 12 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SLC5A11 | 0.30 | 0.33 | lasso | 2 | 0.32 | 2.8e-14 | -7.77 | -8.1 | 4.5e-16 | 0.98 | 0.00 | 1.00 | TRUE |
| 13 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | SLC5A11 | 0.54 | 0.32 | lasso | 6 | 0.30 | 1.8e-12 | -7.15 | -7.3 | 2.8e-13 | 0.95 | 0.00 | 1.00 | FALSE |
| 14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC5A11 | 0.26 | 0.28 | lasso | 6 | 0.31 | 1.0e-32 | -7.66 | -7.4 | 1.5e-13 | 0.95 | 0.00 | 1.00 | FALSE |
| 15 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SLC5A11 | 0.17 | 0.21 | lasso | 3 | 0.18 | 4.9e-11 | -7.77 | -7.8 | 6.5e-15 | 1.00 | 0.00 | 1.00 | FALSE |
| 16 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | SLC5A11 | 0.20 | 0.05 | lasso | 4 | 0.04 | 2.8e-02 | -7.68 | -7.7 | 1.8e-14 | 0.95 | 0.00 | 0.84 | FALSE |
| 17 | The Cancer Genome Atlas | Stomach Adenocarcinoma | SLC5A11 | 0.12 | 0.08 | enet | 7 | 0.07 | 7.0e-06 | -7.66 | -6.9 | 4.3e-12 | 0.93 | 0.00 | 1.00 | FALSE |
| 18 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | SLC5A11 | 0.21 | 0.10 | lasso | 5 | 0.07 | 2.2e-03 | -7.66 | -7.4 | 1.4e-13 | 0.97 | 0.00 | 0.98 | FALSE |
| 19 | The Cancer Genome Atlas | Thyroid Carcinoma | SLC5A11 | 0.35 | 0.44 | lasso | 4 | 0.44 | 4.2e-47 | -7.66 | -7.7 | 1.6e-14 | 0.99 | 0.00 | 1.00 | FALSE |
| 20 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | SLC5A11 | 0.24 | 0.15 | lasso | 3 | 0.14 | 1.1e-04 | -7.68 | -7.7 | 1.6e-14 | 0.97 | 0.00 | 0.97 | FALSE |