TWAS
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Models
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Traits
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Traits
:
Heel bone mineral density (BMD) T-score, automated (left)
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chr6:126,892,049-128,359,362
Best TWAS P=5.83e-74 · Best GWAS P=1.49e-89 conditioned to 2.68e-13
127M
127.2M
127.4M
127.6M
127.8M
128M
128.2M
128.4M
0
20
40
60
80
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
RSPO3
0.02
0.03
blup
60
0.02
1.3e-03
19.298
18.2
5.8e-74
0.92
0.02
0.96
TRUE
1
ROSMAP
Brain Pre-frontal Cortex
ECHDC1
0.22
0.11
enet
54
0.12
1.5e-14
-2.877
-5.4
6.2e-08
-0.10
1.00
0.00
TRUE
3
The Cancer Genome Atlas
Breast Invasive Carcinoma
RSPO3
0.02
0.02
blup
60
0.02
2.8e-04
15.735
16.9
2.5e-64
0.86
0.10
0.70
FALSE
5
The Cancer Genome Atlas
Prostate Adenocarcinoma
RSPO3
0.06
0.02
blup
60
0.04
9.3e-05
19.298
15.8
1.6e-56
0.82
0.01
0.97
FALSE
2
YFS
Blood
RNF146
0.01
0.00
bslmm
323
0.00
4.8e-02
0.014
-7.9
2.7e-15
-0.40
0.05
0.11
FALSE