TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Heel bone mineral density (BMD) T-score, automated (left)
:
←
chr22:40,789,606-42,301,748
Best TWAS P=4.7e-10 · Best GWAS P=2.62e-10 conditioned to 1
40.8M
41M
41.2M
41.4M
41.6M
41.8M
42M
42.2M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Cells EBV-transformed lymphocytes
L3MBTL2
0.12
0.08
lasso
6
0.05
1.0e-02
-6.3
-6.2
4.7e-10
0.98
0.01
0.93
TRUE
2
GTEx
Artery Tibial
L3MBTL2
0.05
0.06
lasso
3
0.05
1.0e-04
-6.2
6.2
7.3e-10
-0.99
0.01
0.98
FALSE
4
YFS
Blood
EP300
0.05
0.04
blup
284
0.05
5.2e-15
-6.3
6.0
1.6e-09
-0.79
0.01
0.99
FALSE
1
GTEx
Artery Aorta
L3MBTL2
0.14
0.01
lasso
6
0.04
1.8e-03
-5.1
5.5
3.1e-08
-0.66
0.03
0.88
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
L3MBTL2
0.05
0.03
enet
9
0.04
1.8e-04
4.7
5.4
7.8e-08
-0.58
0.24
0.27
FALSE