Best TWAS P=1.56e-16 · Best GWAS P=2.33e-20 conditioned to 5.89e-07
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Breast Invasive Carcinoma | SMG6 | 0.03 | 0.01 | blup | 144 | 0.01 | 0.00478 | 6.1 | 8.3 | 1.6e-16 | -0.67 | 0.10 | 0.58 | TRUE |
| 2 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | SMG6 | 0.08 | 0.05 | blup | 144 | 0.07 | 0.00013 | 6.6 | 7.5 | 6.0e-14 | -0.71 | 0.35 | 0.45 | FALSE |