Best TWAS P=6.47e-13 · Best GWAS P=1.15e-10 conditioned to 0.463
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AQP11 | 0.14 | 0.11 | lasso | 7 | 0.13 | 1.0e-15 | -4.7 | -6.5 | 6.9e-11 | 0.72 | 0.82 | 0.18 | FALSE |
2 | GTEx | Adipose Subcutaneous | AP000580.1 | 0.06 | 0.05 | lasso | 4 | 0.06 | 1.4e-05 | 5.7 | -5.1 | 2.9e-07 | 0.42 | 0.19 | 0.78 | FALSE |
3 | GTEx | Artery Tibial | AP000580.1 | 0.12 | 0.08 | lasso | 7 | 0.09 | 1.1e-07 | 5.7 | -6.1 | 8.1e-10 | 0.49 | 0.08 | 0.92 | FALSE |
4 | GTEx | Breast Mammary Tissue (Male) | AP000580.1 | 0.31 | 0.04 | lasso | 4 | 0.09 | 3.6e-03 | -5.6 | -6.3 | 3.9e-10 | 0.84 | 0.04 | 0.50 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | AP000580.1 | 0.12 | 0.02 | enet | 18 | 0.08 | 1.1e-06 | 6.3 | -5.7 | 1.3e-08 | 0.52 | 0.02 | 0.98 | FALSE |
6 | GTEx | Muscle Skeletal | AQP11 | 0.10 | 0.08 | lasso | 4 | 0.09 | 4.7e-09 | -4.7 | -5.4 | 6.2e-08 | 0.67 | 0.96 | 0.04 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | AP000580.1 | 0.09 | 0.09 | lasso | 4 | 0.07 | 1.1e-06 | 6.1 | -6.4 | 2.1e-10 | 0.46 | 0.03 | 0.97 | FALSE |
8 | GTEx | Thyroid | AP000580.1 | 0.08 | 0.04 | lasso | 3 | 0.05 | 1.2e-04 | 6.3 | -6.5 | 6.8e-11 | 0.50 | 0.04 | 0.90 | FALSE |
9 | ROSMAP | Brain Pre-frontal Cortex | AQP11 | 0.07 | 0.02 | blup | 320 | 0.05 | 1.5e-06 | 5.8 | -7.2 | 6.5e-13 | 0.84 | 0.04 | 0.96 | TRUE |
10 | YFS | Blood | AQP11 | 0.01 | 0.02 | lasso | 2 | 0.02 | 2.0e-06 | -6.1 | -6.1 | 1.1e-09 | 0.83 | 0.03 | 0.97 | FALSE |
11 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AQP11 | 0.07 | 0.01 | blup | 39 | 0.03 | 9.7e-05 | -6.3 | -6.9 | 5.0e-12 | 0.75 | 0.01 | 0.94 | FALSE |
12 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | AQP11 | 0.04 | 0.04 | lasso | 1 | 0.02 | 9.5e-03 | -6.1 | -6.1 | 1.3e-09 | 0.82 | 0.01 | 0.85 | FALSE |
13 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | C11orf67 | 0.08 | 0.09 | lasso | 9 | 0.07 | 1.0e-03 | -6.4 | 6.4 | 2.0e-10 | -1.00 | 0.00 | 0.92 | FALSE |
14 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | AQP11 | 0.11 | 0.04 | lasso | 3 | 0.06 | 3.3e-03 | -6.3 | -5.8 | 8.6e-09 | 0.82 | 0.01 | 0.90 | FALSE |