1483 significantly associated models · 258 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 9576675 | 11137778 | 2 | 2 | 7.1e-09 | 1.7e-08 | 1.0e+00 | 100 | CORT KIF1B |
2 | 1 | 22712328 | 24201643 | 1 | 1 | 2.0e-07 | 1.6e-07 | 1.0e+00 | 100 | LUZP1 |
3 | 1 | 149854324 | 151227371 | 1 | 1 | 2.1e-07 | 3.9e-07 | 1.0e+00 | 100 | ADAMTSL4 |
4 | 1 | 183961643 | 185416670 | 1 | 1 | 1.7e-07 | 3.8e-07 | 1.0e-01 | 90 | EDEM3 |
5 | 1 | 204982713 | 206329620 | 5 | 1 | 1.9e-14 | 7.5e-14 | 2.7e-01 | 98 | NUCKS1 |
6 | 1 | 227217340 | 228663659 | 4 | 1 | 8.0e-12 | 1.9e-13 | 3.4e-03 | 84 | JMJD4 |
7 | 2 | 23604114 | 25889403 | 7 | 8 | 4.5e-15 | 2.3e-14 | NaN | NaN | ADCY3 DNAJC27 NCOA1 RP11-443B20.1 TP53I3 |
8 | 2 | 43417083 | 44920960 | 1 | 1 | 4.6e-09 | 2.0e-10 | 1.3e-02 | 85 | LRPPRC |
9 | 2 | 67709195 | 69180661 | 2 | 1 | 7.7e-08 | 9.0e-08 | 1.0e+00 | 100 | RP11-474G23.2 |
10 | 2 | 69978290 | 71471456 | 1 | 2 | 4.4e-16 | 5.1e-14 | 3.7e-02 | 92 | TGFA |
11 | 2 | 134513621 | 137435625 | 8 | 1 | 1.2e-13 | 3.4e-12 | 2.0e-01 | 96 | LOC100129961 |
12 | 2 | 152099885 | 152836845 | 1 | 1 | 2.1e-07 | 6.8e-07 | 2.4e-01 | 94 | NEB |
13 | 3 | 52047421 | 53860103 | 4 | 1 | 6.1e-10 | 1.6e-09 | 1.0e+00 | 100 | RFT1 |
14 | 3 | 84767271 | 86367480 | 1 | 1 | 6.7e-10 | 9.4e-10 | 1.0e+00 | 100 | CADM2 |
15 | 3 | 128788778 | 129284415 | 1 | 1 | 2.3e-07 | 1.5e-05 | 9.4e-01 | 100 | H1FX |
16 | 3 | 140350567 | 141867638 | 1 | 1 | 8.0e-10 | 1.7e-11 | 1.0e+00 | 100 | ZBTB38 |
17 | 4 | 644410 | 2058475 | 2 | 1 | 1.9e-08 | 1.2e-06 | 1.1e-02 | 73 | CRIPAK |
18 | 4 | 17104059 | 18507692 | 2 | 1 | 5.2e-17 | 4.9e-19 | 1.9e-04 | 82 | DCAF16 |
19 | 5 | 129885843 | 132839137 | 15 | 6 | 9.1e-15 | 7.7e-14 | 1.0e+00 | 100 | AC034220.3 CDC42SE2 P4HA2 PDLIM4 RAPGEF6 SLC22A4 |
20 | 6 | 1967240 | 3450266 | 1 | 1 | 3.3e-08 | 4.1e-07 | 1.0e+00 | 100 | MYLK4 |
21 | 6 | 12595275 | 13990267 | 1 | 1 | 2.4e-07 | 4.1e-07 | 1.0e+00 | 100 | RP1-257A7.5 |
22 | 6 | 80374293 | 81763771 | 1 | 1 | 1.4e-07 | 3.3e-06 | 4.6e-02 | 82 | RP11-250B2.6 |
23 | 6 | 129638583 | 131163098 | 2 | 1 | 4.9e-19 | 2.1e-16 | 1.0e+00 | 100 | RP11-73O6.3 |
24 | 7 | 99220083 | 100932330 | 12 | 1 | 1.3e-10 | 1.4e-07 | 3.8e-01 | 97 | PILRA |
25 | 7 | 119935156 | 121630503 | 1 | 1 | 5.1e-08 | 2.3e-08 | 4.4e-03 | 74 | C7orf58 |
26 | 7 | 149847287 | 151252618 | 2 | 1 | 3.2e-08 | 4.0e-14 | 1.9e-07 | 52 | TMEM176A |
27 | 9 | 126844856 | 128643415 | 6 | 1 | 2.0e-10 | 9.5e-10 | 1.0e+00 | 100 | GOLGA1 |
28 | 10 | 78845149 | 80383574 | 2 | 1 | 1.9e-07 | 1.7e-08 | 3.0e-02 | 85 | RP13-39P12.3 |
29 | 10 | 80443273 | 81901722 | 2 | 1 | 1.9e-09 | 1.5e-07 | 1.3e-02 | 77 | ZCCHC24 |
30 | 10 | 98832260 | 99329418 | 1 | 1 | 3.7e-08 | 1.5e-06 | 6.4e-01 | 99 | FRAT1 |
31 | 10 | 102640116 | 105282664 | 10 | 7 | 3.1e-14 | 1.4e-10 | NaN | NaN | C10orf26 C10orf76 NPM3 SUFU TMEM180 |
32 | 11 | 46622392 | 48485877 | 10 | 1 | 1.1e-13 | 1.3e-12 | 1.5e-01 | 96 | FNBP4 |
33 | 11 | 65670510 | 67856510 | 2 | 4 | 1.4e-15 | 8.8e-15 | 1.0e+00 | 100 | CCS RAD9A |
34 | 11 | 73024914 | 75075866 | 3 | 3 | 2.2e-15 | 2.5e-17 | 7.0e-01 | 100 | C2CD3 POLD3 |
35 | 11 | 76602665 | 78216992 | 3 | 1 | 6.5e-13 | 1.2e-10 | 4.6e-01 | 99 | AQP11 |
36 | 12 | 14220891 | 16190627 | 8 | 1 | 9.0e-26 | 4.3e-25 | 1.0e-01 | 98 | MGP |
37 | 12 | 46514123 | 47009428 | 1 | 1 | 2.5e-07 | 6.0e-08 | 8.6e-02 | 90 | SLC38A2 |
38 | 12 | 47671905 | 49061511 | 1 | 1 | 6.9e-08 | 3.2e-07 | 1.0e-01 | 90 | TMEM106C |
39 | 13 | 50600027 | 52109040 | 1 | 1 | 4.2e-08 | 1.2e-16 | 9.3e-11 | 39 | DLEU7 |
40 | 14 | 74245607 | 76089054 | 4 | 2 | 2.5e-08 | 3.2e-08 | 3.3e-01 | 97 | NPC2 YLPM1 |
41 | 15 | 73524629 | 75038482 | 2 | 3 | 6.6e-13 | 9.4e-13 | 1.1e-05 | 62 | LOXL1-AS1 PML |
42 | 15 | 77023336 | 78474476 | 1 | 1 | 3.1e-09 | 2.7e-09 | 1.3e-02 | 82 | HMG20A |
43 | 16 | 1381714 | 2952423 | 5 | 2 | 1.1e-12 | 5.6e-14 | 4.0e-01 | 99 | CASKIN1 SLC9A3R2 |
44 | 16 | 3969463 | 5510848 | 3 | 1 | 1.1e-07 | 2.9e-07 | 3.9e-01 | 97 | C16orf71 |
45 | 16 | 19022448 | 20423000 | 2 | 1 | 1.1e-07 | 4.6e-07 | 1.2e-04 | 42 | AC002550.5 |
46 | 16 | 24614505 | 25167985 | 1 | 1 | 1.2e-07 | 5.1e-07 | 8.0e-01 | 100 | SLC5A11 |
47 | 16 | 29412503 | 31026427 | 10 | 1 | 1.1e-09 | 3.0e-09 | 2.7e-01 | 97 | YPEL3 |
48 | 16 | 69062879 | 70473934 | 4 | 1 | 3.1e-13 | 1.6e-12 | 2.2e-02 | 90 | NOB1 |
49 | 16 | 89013848 | 90172696 | 1 | 1 | 2.9e-08 | 3.9e-06 | 1.6e-04 | 33 | CHMP1A |
50 | 17 | 36211659 | 37644854 | 2 | 1 | 6.7e-15 | 9.6e-15 | 1.0e+00 | 100 | PSMB3 |
51 | 17 | 41946180 | 47357969 | 36 | 4 | 2.7e-15 | 2.4e-13 | 2.9e-02 | 91 | ADAM11 FZD2 HOXB2 WNT3 |
52 | 17 | 61106371 | 62694738 | 3 | 1 | 7.6e-10 | 5.0e-10 | 1.0e+00 | 100 | CD79B |
53 | 18 | 45873080 | 47686517 | 2 | 2 | 2.2e-10 | 2.5e-12 | 2.0e-02 | 89 | C18orf32 DYM |
54 | 18 | 52209411 | 54028036 | 1 | 1 | 1.6e-07 | 1.0e-14 | 1.0e-10 | 30 | TCF4 |
55 | 19 | 1916392 | 2466607 | 1 | 1 | 2.8e-07 | 1.8e-07 | 1.0e+00 | 100 | DOT1L |
56 | 19 | 37123595 | 39002725 | 5 | 1 | 9.1e-08 | 3.5e-08 | 7.1e-04 | 62 | ZNF573 |
57 | 19 | 52002729 | 52501321 | 1 | 1 | 8.8e-08 | 1.3e-10 | 4.3e-06 | 49 | FPR1 |
58 | 20 | 9925555 | 11347455 | 1 | 1 | 1.4e-07 | 7.0e-06 | 3.3e-06 | -7 | JAG1 |
59 | 20 | 32254831 | 35029669 | 27 | 7 | 5.5e-29 | 1.9e-28 | NaN | NaN | CEP250 GDF5 GGT7 MAP1LC3A PIGU |
60 | 20 | 46838455 | 48340036 | 1 | 1 | 1.2e-08 | 2.2e-08 | 1.0e+00 | 100 | ARFGEF2 |
61 | 22 | 40500313 | 41004384 | 1 | 1 | 1.3e-07 | 2.9e-08 | 6.1e-05 | 48 | ADSL |
62 | 22 | 41720697 | 43226599 | 2 | 1 | 1.5e-07 | 4.0e-07 | 4.5e-01 | 98 | CYP2D6 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Uterus | 11 | 1.94 | 3.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 16 | 1.85 | 3.1 |
GTEx | Pituitary | 15 | 1.35 | 3.1 |
GTEx | Brain Cortex | 22 | 2.13 | 3.0 |
GTEx | Brain Hippocampus | 7 | 1.34 | 3.0 |
GTEx | Cells EBV-transformed lymphocytes | 23 | 1.62 | 3.0 |
GTEx | Liver | 10 | 1.39 | 3.0 |
GTEx | Ovary | 17 | 1.87 | 3.0 |
GTEx | Spleen | 19 | 1.35 | 3.0 |
GTEx | Artery Coronary | 16 | 1.35 | 2.9 |
GTEx | Brain Cerebellar Hemisphere | 17 | 1.14 | 2.9 |
GTEx | Brain Frontal Cortex BA9 | 16 | 1.73 | 2.9 |
GTEx | Brain Hypothalamus | 7 | 1.19 | 2.9 |
GTEx | Brain Putamen basal ganglia | 9 | 1.44 | 2.9 |
GTEx | Breast Mammary Tissue (Male) | 19 | 1.59 | 2.9 |
GTEx | Prostate | 13 | 1.56 | 2.9 |
GTEx | Small Intestine Terminal Ileum | 7 | 1.52 | 2.9 |
GTEx | Vagina | 9 | 1.42 | 2.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 8 | 1.17 | 2.9 |
GTEx | Adipose Subcutaneous | 39 | 1.12 | 2.8 |
GTEx | Adipose Visceral Omentum | 18 | 0.88 | 2.8 |
GTEx | Artery Aorta | 33 | 1.11 | 2.8 |
GTEx | Brain Caudate basal ganglia | 12 | 1.30 | 2.8 |
GTEx | Brain Cerebellum | 21 | 1.06 | 2.8 |
GTEx | Esophagus Gastroesophageal Junction | 18 | 1.25 | 2.8 |
GTEx | Esophagus Mucosa | 34 | 1.02 | 2.8 |
GTEx | Heart Atrial Appendage | 16 | 1.01 | 2.8 |
GTEx | Lung | 34 | 1.18 | 2.8 |
GTEx | Muscle Skeletal | 37 | 1.28 | 2.8 |
GTEx | Skin Not Sun Exposed Suprapubic | 27 | 1.10 | 2.8 |
GTEx | Skin Sun Exposed Lower leg | 36 | 0.99 | 2.8 |
GTEx | Stomach | 21 | 1.44 | 2.8 |
GTEx | Testis | 39 | 1.24 | 2.8 |
GTEx | Whole Blood | 25 | 1.25 | 2.8 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 5 | 0.98 | 2.8 |
GTEx | Adrenal Gland | 18 | 1.24 | 2.7 |
GTEx | Artery Tibial | 31 | 0.82 | 2.7 |
GTEx | Breast Mammary Tissue | 24 | 1.22 | 2.7 |
GTEx | Colon Transverse | 22 | 1.07 | 2.7 |
GTEx | Nerve Tibial | 48 | 1.11 | 2.7 |
GTEx | Pancreas | 16 | 0.98 | 2.7 |
GTEx | Thyroid | 42 | 1.05 | 2.7 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 11 | 1.08 | 2.7 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 12 | 1.08 | 2.7 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 15 | 0.94 | 2.7 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 8 | 1.16 | 2.7 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 6 | 1.12 | 2.7 |
GTEx | Breast Mammary Tissue (Female) | 19 | 1.16 | 2.6 |
GTEx | Cells Transformed fibroblasts | 37 | 0.88 | 2.6 |
GTEx | Colon Sigmoid | 14 | 0.96 | 2.6 |
GTEx | Esophagus Muscularis | 30 | 0.93 | 2.6 |
GTEx | Heart Left Ventricle | 17 | 1.11 | 2.6 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 14 | 0.85 | 2.6 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 18 | 0.66 | 2.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 7 | 0.66 | 2.6 |
NTR | Blood | 18 | 0.75 | 2.5 |
ROSMAP | Brain Pre-frontal Cortex | 32 | 0.73 | 2.5 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 8 | 0.73 | 2.5 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 15 | 0.73 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 23 | 0.56 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 12 | 0.59 | 2.5 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 28 | 0.65 | 2.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 19 | 0.65 | 2.5 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 16 | 0.64 | 2.5 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 9 | 0.54 | 2.5 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 2.5 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 30 | 0.65 | 2.5 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 11 | 0.65 | 2.5 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 14 | 1.09 | 2.5 |
METSIM | Adipose | 32 | 0.69 | 2.4 |
YFS | Blood | 28 | 0.61 | 2.4 |
CommonMind | Brain Pre-frontal Cortex | 32 | 0.60 | 2.4 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 29 | 0.66 | 2.4 |
The Cancer Genome Atlas | Thyroid Carcinoma | 34 | 0.66 | 2.4 |