TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Hand grip strength (left)
:
←
→
chr11:73,024,914-75,075,866
Best TWAS P=2.21e-15 · Best GWAS P=2.52e-17 conditioned to 0.699
73M
73.5M
74M
74.5M
75M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Breast Invasive Carcinoma
POLD3
0.02
0.01
lasso
3
0.01
0.0018
6.8
-7.9
2.2e-15
-0.65
0.08
0.17
TRUE
2
GTEx
Testis
POLD3
0.18
-0.01
enet
48
0.00
0.2900
1.8
-6.3
3.4e-10
-0.58
0.02
0.73
TRUE
3
ROSMAP
Brain Pre-frontal Cortex
C2CD3
0.04
0.01
blup
446
0.02
0.0021
2.2
5.2
1.8e-07
0.33
0.21
0.28
TRUE
1
GTEx
Cells Transformed fibroblasts
AP001372.2
0.10
0.02
enet
13
0.05
0.0002
-1.2
5.7
1.0e-08
0.48
0.14
0.34
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
POLD3
0.03
0.00
blup
77
0.01
0.0133
7.0
-5.2
1.9e-07
-0.32
0.04
0.07
FALSE