Best TWAS P=1.03e-08 · Best GWAS P=5.64e-09 conditioned to 0.0372
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LRPPRC | 0.33 | 0.32 | lasso | 11 | 0.33 | 1.6e-41 | 5.1 | 5.3 | 9.9e-08 | -0.71 | 0.06 | 0.94 | FALSE |
2 | GTEx | Adipose Subcutaneous | LRPPRC | 0.18 | 0.09 | lasso | 5 | 0.10 | 1.7e-08 | 5.2 | 5.3 | 1.1e-07 | -0.74 | 0.11 | 0.89 | FALSE |
3 | GTEx | Adipose Visceral Omentum | LRPPRC | 0.14 | 0.05 | enet | 7 | 0.07 | 1.9e-04 | 5.2 | 5.2 | 1.7e-07 | -0.78 | 0.11 | 0.83 | FALSE |
4 | GTEx | Brain Cerebellar Hemisphere | LRPPRC | 0.34 | 0.15 | enet | 13 | 0.10 | 1.5e-03 | -5.8 | 5.7 | 1.0e-08 | -0.80 | 0.02 | 0.90 | TRUE |
5 | GTEx | Brain Cortex | LRPPRC | 0.17 | 0.10 | lasso | 3 | 0.11 | 4.9e-04 | 5.2 | 5.6 | 2.7e-08 | -0.91 | 0.03 | 0.83 | FALSE |
6 | GTEx | Cells EBV-transformed lymphocytes | LRPPRC | 0.63 | 0.33 | lasso | 13 | 0.26 | 4.2e-09 | 5.2 | 5.2 | 2.1e-07 | -0.72 | 0.13 | 0.87 | FALSE |
7 | GTEx | Colon Sigmoid | LRPPRC | 0.18 | 0.06 | lasso | 3 | 0.04 | 1.3e-02 | 5.0 | 5.6 | 2.8e-08 | -0.70 | 0.08 | 0.56 | FALSE |
8 | GTEx | Nerve Tibial | LRPPRC | 0.25 | 0.07 | lasso | 6 | 0.04 | 6.4e-04 | 5.2 | 5.5 | 3.9e-08 | -0.84 | 0.08 | 0.92 | FALSE |
9 | GTEx | Pancreas | LRPPRC | 0.25 | 0.24 | lasso | 3 | 0.20 | 6.8e-09 | 5.6 | 5.4 | 7.1e-08 | -0.76 | 0.04 | 0.96 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | LRPPRC | 0.16 | 0.08 | lasso | 5 | 0.12 | 4.5e-10 | 5.2 | 5.4 | 8.0e-08 | -0.75 | 0.16 | 0.84 | FALSE |
11 | GTEx | Stomach | LRPPRC | 0.13 | 0.05 | lasso | 3 | 0.07 | 4.8e-04 | 5.1 | 5.5 | 4.5e-08 | -0.78 | 0.10 | 0.86 | FALSE |
12 | GTEx | Testis | LRPPRC | 0.30 | 0.20 | enet | 16 | 0.19 | 5.3e-09 | 5.6 | 5.6 | 1.7e-08 | -0.79 | 0.05 | 0.95 | FALSE |
13 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | LRPPRC | 0.06 | 0.04 | lasso | 2 | 0.05 | 2.8e-03 | 5.6 | 5.6 | 2.6e-08 | -0.80 | 0.04 | 0.55 | FALSE |
14 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | LRPPRC | 0.09 | 0.03 | blup | 109 | 0.04 | 6.5e-03 | 5.0 | 5.3 | 9.1e-08 | -0.76 | 0.09 | 0.40 | FALSE |
15 | The Cancer Genome Atlas | Lung Adenocarcinoma | LRPPRC | 0.09 | 0.11 | lasso | 3 | 0.10 | 5.6e-12 | 5.1 | 5.2 | 1.9e-07 | -0.79 | 0.12 | 0.88 | FALSE |
16 | The Cancer Genome Atlas | Rectum Adenocarcinoma | LRPPRC | 0.27 | 0.12 | blup | 109 | 0.13 | 7.3e-04 | 4.0 | 5.6 | 1.7e-08 | -0.80 | 0.06 | 0.72 | FALSE |
17 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | LRPPRC | 0.17 | 0.14 | lasso | 6 | 0.13 | 2.3e-05 | 5.2 | 5.5 | 4.4e-08 | -0.76 | 0.11 | 0.88 | FALSE |
18 | The Cancer Genome Atlas | Thyroid Carcinoma | LRPPRC | 0.15 | 0.14 | lasso | 6 | 0.15 | 1.6e-14 | 5.4 | 5.6 | 2.3e-08 | -0.72 | 0.05 | 0.94 | FALSE |