1406 significantly associated models · 266 unique genes
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# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 9576675 | 11137778 | 3 | 1 | 1.1e-11 | 8.1e-10 | 6.3e-03 | 80 | KIF1B |
2 | 1 | 23271432 | 23766233 | 1 | 1 | 2.5e-07 | 6.9e-07 | 3.7e-02 | 82 | HTR1D |
3 | 1 | 40791792 | 42187205 | 2 | 1 | 1.9e-10 | 5.8e-11 | 1.0e+00 | 100 | SCMH1 |
4 | 1 | 149815323 | 151227371 | 3 | 1 | 4.3e-08 | 5.9e-08 | 1.0e+00 | 100 | ADAMTSL4 |
5 | 1 | 159559531 | 161006019 | 1 | 1 | 6.2e-09 | 4.3e-08 | 3.5e-01 | 97 | COPA |
6 | 1 | 204982713 | 206329620 | 5 | 1 | 8.2e-17 | 1.4e-16 | 1.0e+00 | 100 | NUCKS1 |
7 | 2 | 23604114 | 25889403 | 7 | 9 | 2.3e-14 | 8.0e-16 | NaN | NaN | ADCY3 CENPO NCOA1 RP11-443B20.1 TP53I3 |
8 | 2 | 43417083 | 44920960 | 1 | 1 | 1.0e-08 | 5.6e-09 | 3.7e-02 | 87 | LRPPRC |
9 | 2 | 47979687 | 49429109 | 2 | 1 | 1.6e-08 | 3.6e-09 | 1.0e+00 | 100 | PPP1R21 |
10 | 2 | 67709195 | 69180661 | 2 | 1 | 4.2e-08 | 3.6e-08 | 3.2e-01 | 97 | PPP3R1 |
11 | 2 | 69978290 | 71471456 | 1 | 2 | 3.0e-17 | 3.5e-17 | 5.0e-03 | 89 | TGFA |
12 | 2 | 134513621 | 136403272 | 5 | 1 | 2.9e-12 | 1.6e-11 | 5.3e-01 | 99 | LOC100129961 |
13 | 2 | 152099885 | 152836845 | 1 | 1 | 5.2e-08 | 1.3e-07 | 1.8e-01 | 94 | NEB |
14 | 2 | 171683107 | 173114238 | 1 | 1 | 1.1e-07 | 3.0e-07 | 2.6e-01 | 95 | CYBRD1 |
15 | 2 | 178748168 | 180139951 | 1 | 1 | 2.2e-07 | 2.3e-06 | 9.8e-01 | 100 | RP11-171I2.2 |
16 | 3 | 52020411 | 53860103 | 5 | 2 | 1.4e-10 | 2.3e-09 | 3.9e-01 | 98 | GNL3 RFT1 |
17 | 3 | 140350567 | 141867638 | 1 | 1 | 6.7e-08 | 4.0e-09 | 1.0e+00 | 100 | ZBTB38 |
18 | 4 | 305291 | 2058475 | 4 | 1 | 8.0e-10 | 4.9e-08 | 3.4e-03 | 71 | CRIPAK |
19 | 4 | 17104059 | 18507692 | 2 | 1 | 4.7e-19 | 3.6e-19 | 2.0e-03 | 88 | DCAF16 |
20 | 5 | 129797129 | 132839137 | 16 | 7 | 5.4e-17 | 2.4e-16 | 1.0e+00 | 100 | CDC42SE2 P4HA2-AS1 PDLIM4 RAPGEF6 SLC22A4 SLC22A5 |
21 | 6 | 1967240 | 3450266 | 1 | 1 | 2.9e-08 | 8.7e-07 | 7.2e-01 | 100 | MYLK4 |
22 | 6 | 14551209 | 16209635 | 1 | 1 | 6.8e-08 | 1.3e-09 | 5.6e-03 | 79 | JARID2 |
23 | 6 | 33856903 | 35362848 | 1 | 1 | 7.3e-10 | 6.6e-07 | 1.5e-03 | 59 | C6orf106 |
24 | 6 | 80120201 | 81763771 | 2 | 2 | 2.0e-09 | 2.2e-06 | 8.6e-01 | 100 | BCKDHB RP11-250B2.6 |
25 | 6 | 129638583 | 131163098 | 2 | 1 | 2.7e-20 | 9.4e-18 | 8.5e-01 | 100 | L3MBTL3 |
26 | 6 | 154891396 | 156330580 | 1 | 1 | 7.3e-08 | 4.6e-10 | 4.5e-04 | 68 | TFB1M |
27 | 7 | 99275083 | 101185166 | 7 | 4 | 3.0e-09 | 6.2e-08 | 3.3e-01 | 97 | GIGYF1 PILRA SRRT TFR2 |
28 | 7 | 119935156 | 121630503 | 1 | 1 | 1.8e-09 | 3.7e-08 | 8.5e-03 | 77 | C7orf58 |
29 | 9 | 98515578 | 99932844 | 2 | 1 | 9.5e-09 | 2.7e-08 | 1.0e+00 | 100 | CDC14B |
30 | 9 | 126844856 | 128680148 | 7 | 1 | 4.1e-09 | 1.7e-08 | 4.4e-01 | 98 | SCAI |
31 | 9 | 136197834 | 137631198 | 1 | 1 | 9.2e-08 | 1.6e-07 | 1.0e+00 | 100 | BRD3 |
32 | 10 | 78845149 | 80383574 | 2 | 1 | 4.8e-08 | 5.2e-08 | 2.4e-01 | 95 | DLG5 |
33 | 10 | 80443273 | 82223767 | 5 | 2 | 1.6e-13 | 2.3e-10 | 8.2e-01 | 100 | SFTPA2 ZCCHC24 |
34 | 10 | 98832260 | 99329418 | 1 | 1 | 7.7e-08 | 3.0e-06 | 6.8e-01 | 99 | FRAT1 |
35 | 10 | 103527782 | 105282664 | 6 | 4 | 2.1e-11 | 2.7e-10 | NaN | NaN | ACTR1A CYP17A1-AS1 SFXN2 |
36 | 10 | 120164251 | 121596611 | 1 | 1 | 2.3e-07 | 1.1e-08 | 8.0e-04 | 66 | FAM45A |
37 | 10 | 133754334 | 134268114 | 1 | 1 | 8.1e-08 | 8.4e-08 | 1.0e+00 | 100 | DPYSL4 |
38 | 11 | 46917983 | 48485877 | 4 | 1 | 2.4e-09 | 6.2e-09 | 1.7e-01 | 94 | FNBP4 |
39 | 11 | 66468469 | 67856510 | 1 | 1 | 1.5e-17 | 4.3e-17 | 1.0e+00 | 100 | RAD9A |
40 | 11 | 73024914 | 75075866 | 3 | 3 | 1.3e-20 | 4.7e-22 | 7.0e-01 | 100 | C2CD3 POLD3 |
41 | 11 | 76537114 | 78216992 | 4 | 1 | 1.2e-13 | 2.8e-11 | 2.0e-02 | 88 | AQP11 |
42 | 12 | 772458 | 1344141 | 1 | 1 | 7.5e-08 | 1.9e-06 | 3.2e-01 | 96 | RAD52 |
43 | 12 | 14220891 | 16190627 | 8 | 1 | 7.6e-25 | 1.0e-21 | 3.4e-02 | 95 | ARHGDIB |
44 | 12 | 47671905 | 49133725 | 2 | 1 | 9.6e-09 | 1.3e-06 | 2.2e-01 | 94 | TMEM106C |
45 | 12 | 101713020 | 103148974 | 1 | 1 | 8.0e-08 | 2.5e-06 | 8.4e-02 | 86 | CCDC53 |
46 | 12 | 123558705 | 125196704 | 5 | 1 | 1.9e-09 | 2.1e-08 | 3.1e-02 | 85 | DNAH10 |
47 | 13 | 20282946 | 21799768 | 2 | 1 | 9.2e-08 | 3.8e-06 | 2.3e-01 | 93 | CRYL1 |
48 | 13 | 50592874 | 52109040 | 1 | 2 | 1.3e-07 | 5.7e-19 | 3.4e-10 | 50 | DLEU7 |
49 | 15 | 73524629 | 74915888 | 1 | 2 | 1.0e-12 | 2.2e-13 | 2.8e-07 | 51 | LOXL1-AS1 |
50 | 15 | 74942759 | 76350952 | 3 | 1 | 2.4e-08 | 3.8e-07 | 1.0e+00 | 100 | SNUPN |
51 | 15 | 77023336 | 78474476 | 1 | 1 | 2.1e-11 | 5.9e-11 | 1.0e-02 | 85 | HMG20A |
52 | 16 | 1381714 | 2838000 | 4 | 3 | 3.1e-14 | 1.1e-14 | 3.8e-01 | 99 | CASKIN1 SLC9A3R2 TSC2 |
53 | 16 | 24162204 | 25620010 | 1 | 1 | 1.1e-09 | 4.2e-09 | 1.0e+00 | 100 | SLC5A11 |
54 | 16 | 27691641 | 30803299 | 9 | 2 | 5.1e-08 | 5.8e-08 | 1.0e+00 | 100 | DOC2A NFATC2IP |
55 | 16 | 69062879 | 70473934 | 4 | 1 | 5.3e-11 | 9.6e-11 | 2.6e-02 | 88 | NOB1 |
56 | 16 | 88643457 | 90172696 | 3 | 2 | 8.1e-08 | 1.0e-09 | 5.2e-01 | 99 | ANKRD11 ZNF276 |
57 | 17 | 7203350 | 7711960 | 1 | 1 | 7.8e-08 | 1.3e-06 | 3.8e-02 | 82 | TNFSF12-TNFSF13 |
58 | 17 | 36211659 | 37644854 | 2 | 1 | 4.9e-17 | 1.0e-13 | 1.0e-01 | 95 | PIP4K2B |
59 | 17 | 41946180 | 43913030 | 16 | 3 | 2.7e-11 | 9.0e-12 | 2.4e-02 | 89 | CRHR1 FZD2 PLCD3 |
60 | 17 | 44788310 | 47357969 | 11 | 2 | 5.8e-12 | 8.3e-12 | 3.5e-01 | 98 | HOXB2 WNT3 |
61 | 17 | 60821100 | 62694738 | 11 | 2 | 2.3e-13 | 4.7e-12 | 1.0e+00 | 100 | CD79B CYB561 |
62 | 17 | 62973790 | 64251733 | 1 | 1 | 2.0e-08 | 1.9e-08 | 4.2e-03 | 74 | AXIN2 |
63 | 18 | 12304781 | 13822256 | 1 | 1 | 3.3e-08 | 8.0e-09 | 7.7e-05 | 53 | CEP192 |
64 | 18 | 45873080 | 47686517 | 1 | 2 | 3.4e-09 | 4.2e-12 | 2.9e-03 | 82 | DYM |
65 | 19 | 1473344 | 2923263 | 1 | 1 | 2.3e-09 | 2.6e-09 | 1.0e+00 | 100 | DOT1L |
66 | 19 | 37350856 | 39002725 | 5 | 1 | 1.9e-08 | 1.9e-08 | 4.3e-04 | 61 | ZNF571 |
67 | 19 | 52002729 | 52501321 | 1 | 1 | 1.0e-07 | 9.9e-11 | 3.2e-06 | 48 | FPR1 |
68 | 20 | 32254831 | 35298668 | 34 | 7 | 7.4e-37 | 2.8e-38 | NaN | NaN | CEP250 GGT7 MAP1LC3A MMP24-AS1 UQCC UQCC1 |
69 | 20 | 46838455 | 48591758 | 4 | 1 | 3.5e-10 | 1.6e-09 | 1.0e+00 | 100 | ARFGEF2 |
70 | 21 | 46255195 | 46894021 | 1 | 1 | 2.5e-07 | 5.4e-08 | 2.6e-02 | 83 | ADARB1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Brain Nucleus accumbens basal ganglia | 12 | 1.39 | 3.3 |
GTEx | Brain Cortex | 19 | 1.84 | 3.1 |
GTEx | Brain Hippocampus | 7 | 1.34 | 3.1 |
GTEx | Ovary | 16 | 1.76 | 3.1 |
GTEx | Pituitary | 16 | 1.43 | 3.1 |
GTEx | Uterus | 9 | 1.59 | 3.1 |
GTEx | Brain Frontal Cortex BA9 | 13 | 1.41 | 3.0 |
GTEx | Brain Putamen basal ganglia | 6 | 0.96 | 3.0 |
GTEx | Breast Mammary Tissue (Male) | 17 | 1.42 | 3.0 |
GTEx | Cells EBV-transformed lymphocytes | 23 | 1.62 | 3.0 |
GTEx | Skin Sun Exposed Lower leg | 38 | 1.04 | 3.0 |
GTEx | Spleen | 16 | 1.13 | 3.0 |
GTEx | Vagina | 7 | 1.10 | 3.0 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 8 | 1.57 | 3.0 |
GTEx | Adipose Visceral Omentum | 19 | 0.93 | 2.9 |
GTEx | Artery Aorta | 33 | 1.11 | 2.9 |
GTEx | Artery Coronary | 17 | 1.44 | 2.9 |
GTEx | Artery Tibial | 37 | 0.98 | 2.9 |
GTEx | Brain Caudate basal ganglia | 14 | 1.52 | 2.9 |
GTEx | Brain Cerebellar Hemisphere | 13 | 0.87 | 2.9 |
GTEx | Brain Hypothalamus | 7 | 1.19 | 2.9 |
GTEx | Breast Mammary Tissue | 21 | 1.06 | 2.9 |
GTEx | Esophagus Mucosa | 37 | 1.11 | 2.9 |
GTEx | Heart Atrial Appendage | 15 | 0.95 | 2.9 |
GTEx | Liver | 10 | 1.39 | 2.9 |
GTEx | Lung | 28 | 0.97 | 2.9 |
GTEx | Muscle Skeletal | 30 | 1.04 | 2.9 |
GTEx | Prostate | 9 | 1.08 | 2.9 |
GTEx | Skin Not Sun Exposed Suprapubic | 24 | 0.98 | 2.9 |
GTEx | Small Intestine Terminal Ileum | 8 | 1.74 | 2.9 |
GTEx | Stomach | 17 | 1.17 | 2.9 |
GTEx | Testis | 37 | 1.17 | 2.9 |
GTEx | Whole Blood | 25 | 1.25 | 2.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 6 | 0.88 | 2.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 6 | 1.12 | 2.9 |
GTEx | Adipose Subcutaneous | 38 | 1.09 | 2.8 |
GTEx | Adrenal Gland | 15 | 1.03 | 2.8 |
GTEx | Brain Cerebellum | 20 | 1.01 | 2.8 |
GTEx | Colon Transverse | 18 | 0.87 | 2.8 |
GTEx | Esophagus Gastroesophageal Junction | 13 | 0.90 | 2.8 |
GTEx | Nerve Tibial | 39 | 0.90 | 2.8 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 10 | 0.98 | 2.8 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 12 | 1.08 | 2.8 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 15 | 0.94 | 2.8 |
GTEx | Breast Mammary Tissue (Female) | 20 | 1.22 | 2.7 |
GTEx | Cells Transformed fibroblasts | 26 | 0.62 | 2.7 |
GTEx | Colon Sigmoid | 14 | 0.96 | 2.7 |
GTEx | Esophagus Muscularis | 28 | 0.87 | 2.7 |
GTEx | Pancreas | 14 | 0.86 | 2.7 |
GTEx | Thyroid | 38 | 0.95 | 2.7 |
ROSMAP | Brain Pre-frontal Cortex | 28 | 0.64 | 2.7 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 15 | 0.91 | 2.7 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 11 | 1.00 | 2.7 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 21 | 0.77 | 2.7 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 11 | 0.66 | 2.7 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 6 | 0.87 | 2.7 |
GTEx | Heart Left Ventricle | 11 | 0.72 | 2.6 |
NTR | Blood | 17 | 0.71 | 2.6 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 16 | 0.77 | 2.6 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 23 | 0.56 | 2.6 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 27 | 0.63 | 2.6 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 15 | 0.60 | 2.6 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 8 | 0.60 | 2.6 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 32 | 0.69 | 2.6 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 8 | 0.75 | 2.6 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 11 | 0.65 | 2.6 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 16 | 1.25 | 2.6 |
METSIM | Adipose | 29 | 0.63 | 2.5 |
YFS | Blood | 31 | 0.67 | 2.5 |
CommonMind | Brain Pre-frontal Cortex | 32 | 0.60 | 2.5 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 30 | 0.68 | 2.5 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 10 | 0.49 | 2.5 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 17 | 0.58 | 2.5 |
The Cancer Genome Atlas | Thyroid Carcinoma | 41 | 0.79 | 2.5 |