Best TWAS P=7.72e-15 · Best GWAS P=3.14e-21 conditioned to 4.28e-09
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Aorta | UBN1 | 0.18 | 0.15 | lasso | 4 | 0.14 | 6.8e-08 | 6.3 | -5.5 | 3.8e-08 | -0.04 | 0.17 | 0.82 | FALSE |
2 | GTEx | Artery Tibial | UBN1 | 0.20 | 0.06 | lasso | 7 | 0.07 | 4.8e-06 | 5.7 | -5.1 | 2.9e-07 | -0.02 | 0.67 | 0.32 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | ZNF500 | 0.27 | 0.13 | enet | 13 | 0.12 | 4.4e-04 | 1.9 | 5.4 | 5.7e-08 | 0.00 | 0.15 | 0.60 | TRUE |
4 | GTEx | Brain Putamen basal ganglia | ROGDI | 0.41 | 0.38 | lasso | 7 | 0.30 | 7.9e-08 | 4.9 | -5.4 | 8.4e-08 | -0.06 | 0.09 | 0.89 | FALSE |
5 | GTEx | Esophagus Mucosa | UBN1 | 0.12 | 0.06 | lasso | 3 | 0.08 | 5.1e-06 | 5.9 | -6.0 | 1.5e-09 | -0.05 | 0.12 | 0.87 | FALSE |
6 | GTEx | Esophagus Muscularis | UBN1 | 0.18 | 0.19 | lasso | 4 | 0.19 | 9.1e-12 | 6.3 | -6.1 | 9.4e-10 | -0.04 | 0.54 | 0.46 | FALSE |
7 | GTEx | Nerve Tibial | UBN1 | 0.14 | 0.12 | lasso | 4 | 0.11 | 5.6e-08 | 6.2 | -6.2 | 4.4e-10 | -0.04 | 0.43 | 0.56 | TRUE |
8 | GTEx | Skin Not Sun Exposed Suprapubic | UBN1 | 0.22 | 0.16 | lasso | 4 | 0.14 | 2.5e-08 | 5.9 | -5.2 | 1.8e-07 | -0.04 | 0.57 | 0.43 | FALSE |
9 | GTEx | Skin Sun Exposed Lower leg | PPL | 0.10 | 0.04 | lasso | 6 | 0.02 | 5.7e-03 | 5.9 | 5.7 | 1.6e-08 | 0.05 | 0.10 | 0.66 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | UBN1 | 0.16 | 0.15 | lasso | 5 | 0.17 | 9.5e-14 | 6.3 | -5.7 | 9.2e-09 | -0.05 | 0.46 | 0.54 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | ROGDI | 0.26 | 0.30 | enet | 27 | 0.30 | 5.2e-39 | -4.7 | -5.2 | 2.2e-07 | -0.03 | 1.00 | 0.00 | FALSE |
12 | ROSMAP | Brain Pre-frontal Cortex | RP11-462G12.1 | 0.11 | 0.07 | enet | 18 | 0.06 | 1.1e-08 | -9.2 | -7.8 | 7.7e-15 | 0.86 | 0.00 | 1.00 | TRUE |
13 | The Cancer Genome Atlas | Colon Adenocarcinoma | UBN1 | 0.05 | 0.04 | enet | 7 | 0.05 | 4.2e-04 | -6.2 | 5.7 | 9.7e-09 | 0.06 | 0.02 | 0.74 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ROGDI | 0.03 | 0.04 | lasso | 3 | 0.03 | 1.6e-04 | 5.7 | -5.6 | 2.5e-08 | 0.01 | 0.04 | 0.91 | FALSE |
15 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ROGDI | 0.05 | 0.02 | lasso | 2 | 0.03 | 6.0e-04 | -4.5 | -5.8 | 7.5e-09 | -0.05 | 0.06 | 0.08 | FALSE |