Best TWAS P=2.59e-21 · Best GWAS P=1.34e-27 conditioned to 4.15e-07
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | RP11-95P2.1 | 0.12 | 0.01 | lasso | 3 | 0.02 | 1.0e-02 | 6.0 | -5.7 | 1.4e-08 | 0.00 | 0.05 | 0.05 | FALSE |
2 | GTEx | Artery Aorta | UBN1 | 0.18 | 0.15 | lasso | 4 | 0.14 | 6.8e-08 | 6.0 | -5.5 | 5.1e-08 | -0.04 | 0.16 | 0.84 | FALSE |
3 | GTEx | Brain Cerebellar Hemisphere | ZNF500 | 0.27 | 0.13 | enet | 13 | 0.12 | 4.4e-04 | 3.0 | 6.3 | 2.2e-10 | 0.00 | 0.13 | 0.66 | TRUE |
4 | GTEx | Brain Cortex | ZNF500 | 0.18 | 0.02 | enet | 8 | 0.04 | 2.5e-02 | -4.1 | 5.1 | 2.8e-07 | 0.05 | 0.08 | 0.14 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | RP11-95P2.1 | 0.13 | 0.11 | lasso | 3 | 0.12 | 2.0e-09 | 6.2 | -6.5 | 5.6e-11 | 0.05 | 1.00 | 0.00 | FALSE |
6 | GTEx | Esophagus Mucosa | UBN1 | 0.12 | 0.06 | lasso | 3 | 0.08 | 5.1e-06 | 5.7 | -5.7 | 1.5e-08 | -0.05 | 0.24 | 0.76 | TRUE |
7 | GTEx | Esophagus Muscularis | UBN1 | 0.18 | 0.19 | lasso | 4 | 0.19 | 9.1e-12 | 6.0 | -5.9 | 4.5e-09 | -0.04 | 0.93 | 0.07 | FALSE |
8 | GTEx | Muscle Skeletal | ZNF500 | 0.06 | 0.00 | enet | 15 | 0.00 | 2.8e-01 | 3.0 | 5.7 | 1.2e-08 | 0.05 | 0.06 | 0.16 | FALSE |
9 | GTEx | Nerve Tibial | UBN1 | 0.14 | 0.12 | lasso | 4 | 0.11 | 5.6e-08 | 5.9 | -5.9 | 3.4e-09 | -0.04 | 0.61 | 0.39 | FALSE |
10 | GTEx | Skin Sun Exposed Lower leg | PPL | 0.10 | 0.04 | lasso | 6 | 0.02 | 5.7e-03 | 5.7 | 5.4 | 7.3e-08 | 0.05 | 0.08 | 0.71 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | UBN1 | 0.16 | 0.15 | lasso | 5 | 0.17 | 9.5e-14 | 6.0 | -5.9 | 4.1e-09 | -0.05 | 0.39 | 0.61 | TRUE |
12 | GTEx | Thyroid | RP11-95P2.1 | 0.15 | 0.10 | lasso | 5 | 0.10 | 3.9e-08 | 6.9 | -7.2 | 4.1e-13 | 0.03 | 0.94 | 0.00 | TRUE |
13 | ROSMAP | Brain Pre-frontal Cortex | RP11-462G12.1 | 0.11 | 0.07 | enet | 18 | 0.06 | 1.1e-08 | -10.5 | -9.5 | 2.6e-21 | 0.86 | 0.00 | 1.00 | TRUE |
14 | The Cancer Genome Atlas | Colon Adenocarcinoma | UBN1 | 0.05 | 0.04 | enet | 7 | 0.05 | 4.2e-04 | -6.2 | 5.8 | 6.1e-09 | 0.06 | 0.03 | 0.65 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ROGDI | 0.03 | 0.04 | lasso | 3 | 0.03 | 1.6e-04 | 5.2 | -5.1 | 2.9e-07 | 0.01 | 0.04 | 0.88 | FALSE |